* installing *source* package 'harmony' ...
** this is package 'harmony' version '2.0.1'
** using staged installation
checking for BLAS procedures...
  BLAS procedures NOT found -- disabling BLAS for Armadillo
checking for LAPACK procedures (spotrf_, sgesv_)...
  LAPACK procedures NOT found -- disabling LAPACK for Armadillo
sed: can't read /d/temp/2026_04_21_06_50_17_9494/Rtmp4yNnQK/R.INSTALL53dc3a97ee0/harmony/src/Makevars.in: No such file or directory
configure: src/Makevars written
  PKG_CXXFLAGS = -DARMA_USE_CURRENT -DARMA_DONT_USE_BLAS -DARMA_DONT_USE_LAPACK
  PKG_LIBS     = -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c harmony.cpp -o harmony.o
harmony.cpp: In member function 'void harmony::moe_correct_ridge_cpp()':
harmony.cpp:374:64: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  374 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
harmony.cpp:395:64: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
  395 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c timer.cpp -o timer.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppProgress/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c utils.cpp -o utils.o
g++ -std=gnu++20 -shared -s -static-libgcc -o harmony.dll tmp.def RcppExports.o harmony.o timer.o utils.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x41cf): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x420f): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x43c9): undefined reference to `ssyrk_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x5169): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x8c27): undefined reference to `strtri_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x8fff): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x91f2): undefined reference to `ssyrk_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x9779): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x9a2c): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x16391): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x1646d): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text+0x1669c): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text.hot+0xf40): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text.hot+0x101f): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text.hot+0x1514): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text.hot+0x15ee): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6op_dot10direct_dotIfEENS_19arma_blas_real_onlyIT_E6resultEyPKS3_S7_[_ZN4arma6op_dot10direct_dotIfEENS_19arma_blas_real_onlyIT_E6resultEyPKS3_S7_]+0xb4): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma8syrk_vecILb0ELb1ELb1EE5applyIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_[_ZN4arma8syrk_vecILb0ELb1ELb1EE5applyIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_]+0x256): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE]+0x101): undefined reference to `ssytrf_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE]+0x143): undefined reference to `ssytri_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib7inv_symIfEEbRNS_3MatIT_EE]+0x28a): undefined reference to `ssytrf_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE]+0xb8): undefined reference to `sgetrf_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE]+0x120): undefined reference to `sgetri_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE[_ZN4arma6auxlib3invIfEEbRNS_3MatIT_EE]+0x210): undefined reference to `sgetri_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma16op_normalise_mat5applyIfEEvRNS_3MatIT_EERKS4_yy[_ZN4arma16op_normalise_mat5applyIfEEvRNS_3MatIT_EERKS4_yy]+0x4a9): undefined reference to `sasum_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma16op_normalise_mat5applyIfEEvRNS_3MatIT_EERKS4_yy[_ZN4arma16op_normalise_mat5applyIfEEvRNS_3MatIT_EERKS4_yy]+0x519): undefined reference to `snrm2_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_[_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_]+0x225): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_[_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_]+0x50b): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_[_ZN4arma4syrkILb0ELb1ELb1EE15apply_blas_typeIfNS_3MatIfEEEEvRNS3_IT_EERKT0_S5_S5_]+0x615): undefined reference to `ssyrk_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0x445): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0x5d7): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0x6ac): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0x918): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0xa06): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_3ColIfEENS_2OpINS4_INS_13subview_elem2IfNS_3MatIyEES7_EENS_6op_sumEEENS_9op_htransEEEEEvRNS6_INT_9elem_typeEEERKNS_4GlueISD_T0_S0_EEx]+0xc82): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0x3f5): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0x5a2): undefined reference to `sgemm_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0x677): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0x748): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0x836): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0xa1e): undefined reference to `sdot_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: harmony.o:harmony.cpp:(.text$_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx[_ZN4arma10glue_times18apply_inplace_plusINS_2OpINS_7subviewIfEENS_6op_sumEEENS2_INS_3ColIfEENS_9op_htransEEEEEvRNS_3MatINT_9elem_typeEEERKNS_4GlueISC_T0_S0_EEx]+0xb30): undefined reference to `sgemv_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: utils.o:utils.cpp:(.text+0xde7): undefined reference to `snrm2_'
D:\rtools45\x86_64-w64-mingw32.static.posix\bin/ld.exe: utils.o:utils.cpp:(.text+0x3ed6): undefined reference to `sgemv_'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'harmony'
* removing 'd:/RCompile/CRANincoming/R-devel/lib/harmony'