R Under development (unstable) (2023-09-04 r85066 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(vdiffr)
> library(hagis)
> 
> test_check("hagis")
[ FAIL 0 | WARN 0 | SKIP 30 | PASS 2 ]

══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test-autoplot_hagis_complexities.R:14:3',
  'test-autoplot_hagis_complexities.R:21:3',
  'test-autoplot_hagis_complexities.R:28:3',
  'test-autoplot_hagis_complexities.R:37:3',
  'test-autoplot_hagis_complexities.R:48:3',
  'test-autoplot_hagis_complexities.R:59:3',
  'test-autoplot_hagis_complexities.R:70:3',
  'test-autoplot_rps_summary.R:15:13', 'test-autoplot_rps_summary.R:21:3',
  'test-autoplot_rps_summary.R:27:3', 'test-autoplot_rps_summary.R:34:13',
  'test-autoplot_rps_summary.R:46:13', 'test-autoplot_rps_summary.R:58:13',
  'test-autoplot_rps_summary.R:69:3', 'test-calculate_complexities.R:14:3',
  'test-calculate_complexities.R:33:3', 'test-calculate_complexities.R:103:3',
  'test-calculate_complexities.R:115:3',
  'test-calculate_complexities.R:132:13', 'test-calculate_diversities.R:14:3',
  'test-calculate_diversities.R:34:3', 'test-calculate_diversities.R:105:3',
  'test-calculate_diversities.R:144:3', 'test-calculate_diversities.R:160:13',
  'test-create_binary_matrix.R:14:3', 'test-diversities_table.R:22:3',
  'test-diversities_table.R:28:3', 'test-diversities_table.R:34:3',
  'test-individual_pathotypes.R:15:3', 'test-individual_pathotypes.R:23:13'

[ FAIL 0 | WARN 0 | SKIP 30 | PASS 2 ]
Deleting unused snapshots:
• autoplot_hagis_complexities/count-complexities-asc-blue.svg
• autoplot_hagis_complexities/count-complexities.svg
• autoplot_hagis_complexities/perc-complexities-asc-blue.svg
• autoplot_hagis_complexities/perc-complexities-blue.svg
• autoplot_hagis_complexities/perc-complexities-desc-blue.svg
• autoplot_hagis_complexities/perc-complexities.svg
• autoplot_rps_summary/count-summary-asc-blue.svg
• autoplot_rps_summary/count-summary.svg
• autoplot_rps_summary/perc-summary-asc-blue.svg
• autoplot_rps_summary/perc-summary-blue.svg
• autoplot_rps_summary/perc-summary-des-blue.svg
• autoplot_rps_summary/perc-summary.svg
> 
> proc.time()
   user  system elapsed 
   1.75    0.18    1.92