context("test-browser") test_that("open_in_gwas_catalog", { not_one_of <- '`gwas_catalog_entity` must be one of "study", "variant", "trait", "gene", "region" or "publication"' local_mocked_bindings( `browse_url` = function(...) TRUE ) expect_true(open_in_gwas_catalog('blah')) expect_error(open_in_gwas_catalog(42L), "`identifier` must be a character vector.") expect_error(open_in_gwas_catalog('GCST000016', gwas_catalog_entity = 42), "`gwas_catalog_entity` must be a character vector") expect_error(open_in_gwas_catalog(NA_character_), "The following positions of `identifier` are NAs: 1.") expect_error(open_in_gwas_catalog(c(NA_character_, 'GCST000016', NA_character_)), "The following positions of `identifier` are NAs: 1 and 3.") expect_error(open_in_gwas_catalog(NA_integer_), "`identifier` must be a character vector.") expect_error(open_in_gwas_catalog(NA_real_), "`identifier` must be a character vector.") expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'study')) expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'variant')) expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'trait')) expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'gene')) expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'region')) expect_true(open_in_gwas_catalog('blah', gwas_catalog_entity = 'publication')) }) # test_that("open_in_gwas_catalog", { # not_one_of <- '`gwas_catalog_entity` must be one of "study", "variant", "trait", "gene", "region" or "publication"' # with_mocked_bindings( # `browseURL` = function(...) TRUE, # expect_error(open_in_gwas_catalog('GCST000016', gwas_catalog_entity = c('a', 'b')), # not_one_of), # expect_error(open_in_gwas_catalog('GCST000016', gwas_catalog_entity = NA_character_), # not_one_of), # expect_error(open_in_gwas_catalog('blah', gwas_catalog_entity = 'bad_entity'), # not_one_of) # ) # })