skip_on_cran() skip_if_not(is_pkg_installed("cardx", reference_pkg = "gtsummary")) test_that("gather_ard(x) works with `tbl_*()` functions", { # tbl_summary() expect_false( tbl_summary(trial, by = trt, include = c(age, grade)) |> add_difference() |> gather_ard() |> is_empty() ) # tbl_continuous() expect_false( tbl_continuous( data = trial, variable = age, by = trt, include = grade ) |> gather_ard() |> is_empty() ) # tbl_regression() expect_false( glm(response ~ age + grade, trial, family = binomial()) |> tbl_regression(exponentiate = TRUE) |> gather_ard() |> is_empty() ) # tbl_uvregression() expect_false( tbl_uvregression( trial, method = glm, y = response, method.args = list(family = binomial), exponentiate = TRUE, include = c("age", "grade") ) |> gather_ard() |> is_empty() ) # tbl_stack() expect_false({ t1 <- glm(response ~ trt, trial, family = binomial) %>% tbl_regression( exponentiate = TRUE, label = list(trt ~ "Treatment (unadjusted)") ) t2 <- glm(response ~ trt + grade + stage + marker, trial, family = binomial) %>% tbl_regression( include = "trt", exponentiate = TRUE, label = list(trt ~ "Treatment (adjusted)") ) tbl_stack(list(t1, t2)) |> gather_ard() |> is_empty() }) # tbl_merge() expect_false({ glm(response ~ trt + grade + age, trial, family = binomial) %>% tbl_regression(exponentiate = TRUE) %>% list(., .) |> tbl_merge() |> gather_ard() |> is_empty() }) # tbl_strata() expect_false( trial |> select(age, grade, stage, trt) |> mutate(grade = paste("Grade", grade)) |> tbl_strata( strata = grade, .tbl_fun = ~ .x |> tbl_summary(by = trt, missing = "no") |> add_n(), .header = "**{strata}**, N = {n}" ) |> gather_ard() |> is_empty() ) expect_false( trial |> select(age, grade, stage, trt) |> mutate(grade = paste("Grade", grade)) |> tbl_strata( strata = grade, .tbl_fun = ~ .x |> tbl_summary(by = trt, missing = "no") |> add_n(), .combine_with = "tbl_stack" ) |> gather_ard() |> is_empty() ) }) test_that("gather_ard(x) works with `tbl_ard_*()` functions", { # tbl_ard_summary() expect_false( cards::ard_stack( data = cards::ADSL, cards::ard_categorical(variables = "AGEGR1"), cards::ard_continuous(variables = "AGE"), .attributes = TRUE, .missing = TRUE ) |> tbl_ard_summary() |> gather_ard() |> is_empty() ) # tbl_ard_continuous() expect_false( cards::bind_ard( # the primary ARD with the results cards::ard_continuous(trial, by = grade, variables = age), # add missing and attributes ARD cards::ard_missing(trial, by = grade, variables = age), cards::ard_attributes(trial, variables = c(grade, age)) ) |> tbl_ard_continuous(variable = "age", include = "grade") |> gather_ard() |> is_empty() ) # tbl_ard_wide_summary() expect_false( cards::ard_stack( trial, cards::ard_continuous(variables = age), .missing = TRUE, .attributes = TRUE ) |> tbl_ard_wide_summary() |> gather_ard() |> is_empty() ) })