R Under development (unstable) (2025-04-22 r88173 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(gtexr) > > test_check("gtexr") * numberOfPages = 665 * page = 0 * maxItemsPerPage = 2 * totalNumberOfItems (recordsFiltered) = 1329 * recordsTotal = 72513 -- Paging info ----------------------------------------------------------------- * numberOfPages = 2 * page = 0 * maxItemsPerPage = 1 * totalNumberOfItems = 2 [ FAIL 0 | WARN 0 | SKIP 54 | PASS 51 ] ══ Skipped tests (54) ══════════════════════════════════════════════════════════ • On CRAN (54): 'test-calculate_expression_quantitative_trait_loci.R:4:5', 'test-calculate_ieqtls.R:71:3', 'test-calculate_isqtls.R:2:3', 'test-calculate_splicing_quantitative_trait_loci.R:4:5', 'test-download.R:2:3', 'test-get_annotation.R:49:3', 'test-get_clustered_median_exon_expression.R:2:3', 'test-get_clustered_median_gene_expression.R:2:3', 'test-get_clustered_median_junction_expression.R:4:5', 'test-get_clustered_median_transcript_expression.R:4:5', 'test-get_collapsed_gene_model_exon.R:2:3', 'test-get_dataset_info.R:2:3', 'test-get_downloads_page_data.R:17:3', 'test-get_eqtl_genes.R:2:3', 'test-get_exons.R:2:3', 'test-get_expression_pca.R:2:3', 'test-get_file_list.R:2:3', 'test-get_fine_mapping.R:2:3', 'test-get_full_get_collapsed_gene_model_exon.R:4:5', 'test-get_functional_annotation.R:2:3', 'test-get_gene_expression.R:2:3', 'test-get_gene_search.R:2:3', 'test-get_genes.R:2:3', 'test-get_genomic_features.R:43:3', 'test-get_gwas_catalog_by_location.R:2:3', 'test-get_image.R:2:3', 'test-get_independent_eqtl.R:2:3', 'test-get_linkage_disequilibrium_by_variant_data.R:4:5', 'test-get_linkage_disequilibrium_data.R:2:3', 'test-get_maintenance_message.R:2:3', 'test-get_median_exon_expression.R:2:3', 'test-get_median_gene_expression.R:2:3', 'test-get_median_junction_expression.R:2:3', 'test-get_median_transcript_expression.R:2:3', 'test-get_multi_tissue_eqtls.R:2:3', 'test-get_neighbor_gene.R:2:3', 'test-get_news_item.R:2:3', 'test-get_sample_biobank_data.R:2:3', 'test-get_sample_datasets.R:2:3', 'test-get_significant_single_tissue_eqtls.R:2:3', 'test-get_significant_single_tissue_eqtls_by_location.R:4:5', 'test-get_significant_single_tissue_ieqtls.R:2:3', 'test-get_significant_single_tissue_isqtls.R:2:3', 'test-get_significant_single_tissue_sqtls.R:2:3', 'test-get_single_nucleus_gex.R:58:3', 'test-get_single_nucleus_gex_summary.R:2:3', 'test-get_sqtl_genes.R:2:3', 'test-get_subject.R:2:3', 'test-get_tissue_site_detail.R:2:3', 'test-get_top_expressed_genes.R:2:3', 'test-get_transcripts.R:2:3', 'test-get_variant.R:2:3', 'test-get_variant_by_location.R:2:3', 'test-gtexr_api_match_checks.R:89:3' [ FAIL 0 | WARN 0 | SKIP 54 | PASS 51 ] > > # # To get code coverage report > # withr::with_envvar(c("NOT_CRAN" = "true"), > # {x <- covr::report()}) > > proc.time() user system elapsed 4.00 0.37 4.34