R Under development (unstable) (2023-11-13 r85520 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(gspcr)
> 
> test_check("gspcr")
# weights:  9 (4 variable)
initial  value 35.155593 
iter  10 value 19.338717
final  value 19.332585 
converged
# weights:  12 (6 variable)
initial  value 35.155593 
iter  10 value 19.075112
iter  20 value 19.017753
final  value 19.017144 
converged
# weights:  6 (2 variable)
initial  value 35.155593 
final  value 32.416727 
converged
WARNING: The argument 'npcs_range' was misspecified. You cannot ask for more PCs than the number of columns in the input data 'ivs'. The values (51) exceded the allowed range and were dropped.WARNING IN ASSOCIATION MEASURE COMPUTATION
One or more computations of the bivariate association measures resulted in these warnings:
glm.fit: algorithm did not converge

WARNING IN ASSOCIATION MEASURE COMPUTATION
One or more computations of the bivariate association measures resulted in these warnings:
glm.fit: fitted probabilities numerically 0 or 1 occurred

WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 1; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 2; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 3; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 3; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 3; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 3; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 3; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 4; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 8; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 9; npcs: 2; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: algorithm did not converge"
WARNING IN K-FOLD LOOP
Fold: 5; Threshold: 9; npcs: 3; resulted in the following warning:
"glm.fit: fitted probabilities numerically 0 or 1 occurred"

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 185 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 185 ]
> 
> proc.time()
   user  system elapsed 
  79.56    9.57   89.17