downloading reverse dependencies ... downloading BayesOrdDesign_0.1.2.tar.gz ... ok downloading gsbDesign_1.0-3.tar.gz ... ok downloading gsDesign2_1.1.2.tar.gz ... ok downloading randomizeR_3.0.2.tar.gz ... ok downloading ADCT_0.1.0.tar.gz ... ok downloading gMCPLite_0.1.5.tar.gz ... ok downloading gscounts_0.1-4.tar.gz ... ok downloading ph2bye_0.1.4.tar.gz ... ok downloading ph2mult_0.1.1.tar.gz ... ok downloading RTSA_0.2.2.tar.gz ... ok downloading simtrial_0.3.2.tar.gz ... ok installing dependencies ‘bshazard’, ‘gsDesign’, ‘gsDesign2’, ‘madness’, ‘npsurvSS’, ‘PwrGSD’, ‘rjmcmc’, ‘schoolmath’, ‘simtrial’, ‘superdiag’ begin installing package ‘schoolmath’ begin installing package ‘superdiag’ begin installing package ‘madness’ begin installing package ‘npsurvSS’ begin installing package ‘simtrial’ begin installing package ‘PwrGSD’ begin installing package ‘bshazard’ begin installing package ‘gsDesign’ * installing *source* package ‘schoolmath’ ... ** package ‘schoolmath’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (schoolmath) * installing *source* package ‘npsurvSS’ ... ** package ‘npsurvSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (npsurvSS) * installing *source* package ‘superdiag’ ... ** package ‘superdiag’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (superdiag) * installing *source* package ‘bshazard’ ... ** package ‘bshazard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bshazard) * installing *source* package ‘gsDesign’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0CVZrt/R.INSTALL211992365a85d2/gsDesign/src' gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gridpts.c -o gridpts.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsbound.c -o gsbound.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsbound1.c -o gsbound1.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsdensity.c -o gsdensity.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c h1.c -o h1.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hupdate.c -o hupdate.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c probpos.c -o probpos.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprobrej.c -o rprobrej.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stdnorpts.c -o stdnorpts.o gcc-13 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gsDesign.so gridpts.o gsbound.o gsbound1.o gsdensity.o h1.o hupdate.o init.o probpos.o rprobrej.o stdnorpts.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0CVZrt/R.INSTALL211992365a85d2/gsDesign/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-gsDesign/00new/gsDesign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsDesign) begin installing package ‘gsDesign2’ * installing *source* package ‘PwrGSD’ ... ** package ‘PwrGSD’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph2rMbI/R.INSTALL21198e63422af0/PwrGSD/src' gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c AsyPwrGSD.c -o AsyPwrGSD.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Finv.c -o Finv.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SimPwrGSD.c -o SimPwrGSD.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c StCu2Bnds.c -o StCu2Bnds.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WtdLogRank.c -o WtdLogRank.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agghaz.c -o agghaz.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmptpwrgsd.c -o cmptpwrgsd.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cpblocked.c -o cpblocked.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c drift.c -o drift.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c driftfu.c -o driftfu.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c grpseqbnds.c -o grpseqbnds.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c htilde.c -o htilde.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c intsurvdiff.c -o intsurvdiff.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lookup.c -o lookup.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c myapprox.c -o myapprox.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mystack.c -o mystack.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mysurvfit.c -o mysurvfit.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c projectend.c -o projectend.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rao-blackwell.c -o rao-blackwell.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-13 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trand.c -o trand.o gcc-13 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PwrGSD.so AsyPwrGSD.o Finv.o SimPwrGSD.o StCu2Bnds.o WtdLogRank.o agghaz.o cmptpwrgsd.o cpblocked.o drift.o driftfu.o grpseqbnds.o htilde.o intsurvdiff.o lookup.o myapprox.o mystack.o mysurvfit.o projectend.o rao-blackwell.o registerDynamicSymbol.o trand.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph2rMbI/R.INSTALL21198e63422af0/PwrGSD/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-PwrGSD/00new/PwrGSD/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PwrGSD) * installing *source* package ‘madness’ ... ** package ‘madness’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘outer’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘eigen’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘sqrtm’ from package ‘expm’ in package ‘madness’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘madness’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘madness’ Creating a new generic function for ‘vech’ in package ‘madness’ ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (madness) begin installing package ‘rjmcmc’ * installing *source* package ‘rjmcmc’ ... ** package ‘rjmcmc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjmcmc) * installing *source* package ‘simtrial’ ... ** package ‘simtrial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjlV7Kr/R.INSTALL21198c163156eb/simtrial/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rpwexp_inverse_cdf.cpp -o rpwexp_inverse_cdf.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rpwexp_naive.cpp -o rpwexp_naive.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o simtrial.so RcppExports.o rpwexp_inverse_cdf.o rpwexp_naive.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjlV7Kr/R.INSTALL21198c163156eb/simtrial/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-simtrial/00new/simtrial/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simtrial) * installing *source* package ‘gsDesign2’ ... ** package ‘gsDesign2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoRdxdg/R.INSTALL211b63e3fba53/gsDesign2/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gridpts.cpp -o gridpts.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c h1.cpp -o h1.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hupdate.cpp -o hupdate.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gsDesign2.so RcppExports.o gridpts.o h1.o hupdate.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoRdxdg/R.INSTALL211b63e3fba53/gsDesign2/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-gsDesign2/00new/gsDesign2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsDesign2) checking gsDesign_3.6.2.tar.gz ... checking BayesOrdDesign_0.1.2.tar.gz ... checking gsbDesign_1.0-3.tar.gz ... checking gsDesign2_1.1.2.tar.gz ... checking randomizeR_3.0.2.tar.gz ... checking ADCT_0.1.0.tar.gz ... checking gMCPLite_0.1.5.tar.gz ... checking gscounts_0.1-4.tar.gz ... checking ph2bye_0.1.4.tar.gz ... checking ph2mult_0.1.1.tar.gz ... checking RTSA_0.2.2.tar.gz ... checking simtrial_0.3.2.tar.gz ... Depends: Package: gsDesign Depends: R (>= 3.5.0) Imports: dplyr (>= 1.1.0), ggplot2 (>= 3.1.1), graphics, gt, magrittr, methods, r2rtf, rlang, stats, tibble, tidyr, tools, xtable Timings: user system elapsed gsDesign 186.697 8.342 196.972 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 4 7 Check results summary: gsDesign ... OK rdepends_ADCT ... NOTE * checking LazyData ... NOTE rdepends_BayesOrdDesign ... OK rdepends_gMCPLite ... OK rdepends_gsbDesign ... OK rdepends_gscounts ... OK rdepends_gsDesign2 ... OK rdepends_ph2bye ... NOTE * checking LazyData ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_ph2mult ... NOTE * checking LazyData ... NOTE rdepends_randomizeR ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_RTSA ... OK rdepends_simtrial ... OK