source_files <- list.files("./old_function/", "*.R$") sapply(paste0("./old_function/", source_files), source) test_that("expected event vs gsDesign", { enroll_rate <- define_enroll_rate(duration = c(2, 1, 2), rate = c(5, 10, 20)) fail_rate <- define_fail_rate(duration = c(1, 1, 1), fail_rate = c(.05, .02, .01), dropout_rate = .01) total_duration <- 20 x1 <- gsDesign::eEvents( # gsDesign lambda = fail_rate$fail_rate, S = fail_rate$duration[1:(nrow(fail_rate) - 1)], eta = fail_rate$dropout_rate, gamma = enroll_rate$rate, R = enroll_rate$duration, T = total_duration )$d x2 <- eEvents_df_( # gsDesign2 old version enrollRates = enroll_rate %>% dplyr::rename(Stratum = stratum), failRates = fail_rate %>% dplyr::rename(Stratum = stratum, failRate = fail_rate, dropoutRate = dropout_rate), total_duration, simple = TRUE ) x3 <- expected_event( # gsDesign2 latest version enroll_rate, fail_rate, total_duration, simple = TRUE ) expect_equal(x1, x2) expect_equal(x2, x3) }) test_that("expected_event returns consistent results (regression tests)", { # Note: all expected outputs were computed on 2023-08-11 with gsDesign2 # version 1.0.9 (installed from CRAN). The newer `define_enroll_rate()` and # `define_fail_rate()` were not available in this older version # Default arguments, simple output (total event count only) observed <- expected_event() expected <- 57.3537033783035 expect_equal(observed, expected) # Event count by time period observed <- expected_event(simple = FALSE) expected <- data.frame( t = c(0, 3), fail_rate = c(0.0770163533955495, 0.0385081766977747), event = c(22.2482399817186, 35.1054633965849) ) expect_equal(observed, expected) # Early cutoff observed <- expected_event(total_duration = .5) expected <- 0.0285092329152224 expect_equal(observed, expected) # Single time period example observed <- expected_event( enroll_rate = define_enroll_rate(duration = 10, rate = 10), fail_rate = define_fail_rate(duration = 100, fail_rate = log(2) / 6, dropout_rate = .01), total_duration = 22, simple = FALSE ) expected <- data.frame( t = 0, fail_rate = 0.115524530093324, event = 80.4097370913342 ) expect_equal(observed, expected) # Single time period example, multiple enrollment periods observed <- expected_event( enroll_rate = define_enroll_rate(duration = c(5, 5), rate = c(10, 20)), fail_rate = define_fail_rate(duration = 100, fail_rate = log(2) / 6, dropout_rate = .01), total_duration = 22, simple = FALSE ) expected <- data.frame( t = 0, fail_rate = 0.115524530093324, event = 118.848383110223 ) expect_equal(observed, expected) # example from https://github.com/Merck/gsDesign2/issues/250 observed <- expected_event( enroll_rate = define_enroll_rate(duration = c(2, 1, 2), rate = c(5, 10, 20)), fail_rate = define_fail_rate(duration = c(1, 1, 100), fail_rate = c(0.05, 0.02, 0.01), dropout_rate = 0.01), total_duration = 12, simple = FALSE ) expected <- data.frame( t = c(0, 1, 2), fail_rate = c(0.05, 0.02, 0.01), event = c(2.91177332078756, 1.11333393252082, 3.45481304353542) ) expect_equal(observed, expected) })