R Under development (unstable) (2023-08-21 r84998 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > library(testthat) > #Need to execute the following for manual checking > #Sys.setenv(NOT_CRAN = "true") > test_check("growthPheno") Loading required package: growthPheno #### Test splitContGRdiff with small example #### Test corrPlot #### Test byIndv4Times_GRsDiff with small example #### Test importExcel arguments #### Test importExcel times #### Test longitudinalPrime #### Test PVA #### Test probeSmoothing with Judith Atieno 0278 #### Test probeSmoothing with small example #### Test probeSmoothing with tomato example #### Test smooth.frames with a baby example #### Test probeSmooths with Judith Atieno 0278 #### Test probeSmooths with small example #### Test probeSmooths with tomato example #### Test probeSmooths Rice experiment #### Test using Rice vignette with no plots #### Test fitSpline using NCSS with leaf data when there are missing values #### Test fitSpline using NCSS with leaf data for log-smoothing #### Test correctBoundaries for NCSS in fitSpline using a single plant from Rice germplasm #### Test fitSpline using PS with leaf data when there are missing values #### Test splitSplines using PS with leaf data, including log-smoothing #### Test fitSpline using PS with leaf data when there are missing values #### Test splitSplines with small example #### Test using Tomato vignette #### Test traitSmooth with small example #### Test traitExtractFeatures with tomato example #### Test byIndv4Intvl_WaterUse with small example #### Test byIndv4Intvl_GRs with small example #### Test spline fitting using NCSS with leaf data when there are missing values #### Test byIndv4Times_SplinesGRs using NCSS with leaf data for log-smoothing #### Test correctBoundaries for NCSS in fitSpline using a single plant from Rice germplasm #### Test byIndv4Times_SplinesGRs using PS with leaf data when there are missing values #### Test byIndv4Times_SplinesGRs using PS with leaf data, including log-smoothing #### Test fitSpline using PS with leaf data when there are missing values #### Test byIndv4Times_SplinesGRs with small example #### Test \dontrun examples for exampleData #### Test byIndv_ValueCalc for exampleData #### Test smoothSpline using NCSS with leaf data when there are missing values [ FAIL 0 | WARN 0 | SKIP 38 | PASS 0 ] ══ Skipped tests (38) ══════════════════════════════════════════════════════════ • On CRAN (38): 'testContGRdiff.r:4:3', 'testCorrPlot.r:4:3', 'testGRsDiff.r:4:3', 'testImportXL.r:4:3', 'testImportXL.r:144:3', 'testLongiPrime.r:4:3', 'testPVA.r:4:3', 'testProbeSmoothing.r:5:3', 'testProbeSmoothing.r:106:3', 'testProbeSmoothing.r:234:3', 'testProbeSmooths.r:5:3', 'testProbeSmooths.r:40:3', 'testProbeSmooths.r:447:3', 'testProbeSmooths.r:887:3', 'testProbeSmooths.r:1227:3', 'testRiceNoPlots.r:6:3', 'testSplines.r:7:3', 'testSplines.r:204:3', 'testSplines.r:257:3', 'testSplines.r:322:3', 'testSplines.r:521:3', 'testSplines.r:591:3', 'testSplines.r:622:3', 'testTomatovignette.r:6:3', 'testTraitWrappers.r:6:3', 'testTraitWrappers.r:191:3', 'testbyIndv4Intvl.R:6:3', 'testbyIndv4Intvl.R:143:3', 'testbyIndv4Times.r:5:3', 'testbyIndv4Times.r:209:3', 'testbyIndv4Times.r:281:3', 'testbyIndv4Times.r:346:3', 'testbyIndv4Times.r:549:3', 'testbyIndv4Times.r:629:3', 'testbyIndv4Times.r:661:3', 'testexampleData.r:5:3', 'testexampleData.r:175:3', 'testsmoothSpline.R:4:3' [ FAIL 0 | WARN 0 | SKIP 38 | PASS 0 ] > #test_check("growthPheno", filter = "Rice")#leave out test in name > > proc.time() user system elapsed 3.20 1.20 5.04