* using log directory ‘/srv/hornik/tmp/CRAN_pretest/grmtree.Rcheck’ * using R Under development (unstable) (2025-11-24 r89059) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.5 (1) Debian flang version 21.1.5 (1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘grmtree/DESCRIPTION’ ... OK * this is package ‘grmtree’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/124s] NOTE Maintainer: ‘Olayinka I. Arimoro ’ New submission Possibly misspelled words in DESCRIPTION: GRM (13:26, 15:3, 17:59) partykit (14:3) Found the following (possibly) invalid URLs: URL: https://www.gnu.org/licenses/gpl-3.0 From: README.md Status: Error Message: Timeout was reached [www.gnu.org]: Connection timed out after 60002 milliseconds The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘grmtree’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/4s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [193s/193s] ERROR Running ‘testthat.R’ [193s/193s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(grmtree) Loading required package: partykit Loading required package: grid Loading required package: libcoin Loading required package: mvtnorm Loading required package: mirt Loading required package: stats4 Loading required package: lattice Attaching package: 'grmtree' The following object is masked from 'package:partykit': varimp > > test_check("grmtree") Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Saving _problems/test-fscores-56.R Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Processing node: 4 Processing node: 5 Processing node: 1 Processing node: 4 Processing node: 5 === Starting threshpar test === Current objects: asti nodes thresh thresh_sub tree Tree 1 baseline perf: -3211.79645622563 Tree 2 baseline perf: -3357.79541064178 Tree 3 baseline perf: -5016.5187850085 Tree 4 baseline perf: -3516.02760079385 Tree 5 baseline perf: -3341.12218244418 Tree 6 baseline perf: -3187.27969802736 Tree 7 baseline perf: -3427.18513023491 Tree 8 baseline perf: -6234.86325827266 Tree 9 baseline perf: -3527.17771357321 Tree 10 baseline perf: -3661.04162144703 Tree 11 baseline perf: -2986.22403741033 Tree 12 baseline perf: -3254.03151558799 Tree 13 baseline perf: -3339.69507746852 Tree 14 baseline perf: -3818.89516661169 Tree 15 baseline perf: -3784.73018538186 Tree 16 baseline perf: -3707.3178792185 Tree 17 baseline perf: -3703.86500366675 Tree 18 baseline perf: -4009.65266808058 Tree 19 baseline perf: -3144.05398402234 Tree 20 baseline perf: -3733.10384786973 Tree 21 baseline perf: -3345.3418744168 Tree 22 baseline perf: -3846.12214117524 Tree 23 baseline perf: -3146.20778997734 Tree 24 baseline perf: -3137.73034703326 Baseline OOB performance: -3643.24080727459 Using 24 trees Tree 1 perf: -3237.28979946462 Tree 2 perf: -3510.55029370654 Tree 3 perf: -5382.66574726859 Tree 4 perf: -3668.78502785979 Tree 5 perf: -3341.12218244418 Tree 6 perf: -3195.72923666143 Tree 7 perf: -3477.04418595667 Tree 8 perf: -6456.40789631507 Tree 9 perf: -3610.34818508496 Tree 10 perf: -3762.11248874199 Tree 11 perf: -3023.32992160033 Tree 12 perf: -3367.64934856287 Tree 13 perf: -3400.72351588014 Tree 14 perf: -3911.23732306672 Tree 15 perf: -3784.73018538186 Tree 16 perf: -3747.49864796142 Tree 17 perf: -3728.46771778082 Tree 18 perf: -4033.25923373979 Tree 19 perf: -3039.34599158066 Tree 20 perf: -3838.32412915673 Tree 21 perf: -3430.77270698089 Tree 22 perf: -3876.54656872905 Tree 23 perf: -3146.20778997734 Tree 24 perf: -3151.87722093814 Variable: gender | Importance: 70.1769154271055 (based on 24 trees) Processing variable: group Tree 1 perf: -3208.01077263813 Tree 2 perf: -3452.7071945312 Tree 3 perf: -5090.58220727594 Tree 4 perf: -3502.42964571902 Tree 5 perf: -3414.86120473469 Tree 6 perf: -3212.47794155041 Tree 7 perf: -3540.66790237906 Tree 8 perf: -6614.67619975697 Tree 9 perf: -3846.605077692 Tree 10 perf: -3739.15760024865 Tree 11 perf: -3020.06385987344 Tree 12 perf: -3429.40647215918 Tree 13 perf: -3393.75305719138 Tree 14 perf: -3792.55000799924 Tree 15 perf: -3831.6578694184 Tree 16 perf: -3718.83996450187 Tree 17 perf: -3775.20820837271 Tree 18 perf: -4095.09693769273 Tree 19 perf: -3189.94320491056 Tree 20 perf: -3884.47841034124 Tree 21 perf: -3345.3418744168 Tree 22 perf: -4007.37368039245 Tree 23 perf: -3171.69487045851 Tree 24 perf: -3217.04355716128 Variable: group | Importance: 85.7020144510757 (based on 24 trees) [ FAIL 1 | WARN 8 | SKIP 0 | PASS 198 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fscores.R:50:5'): fscores_grmtree returns correct structure ── Expected `expect_message(res <- fscores_grmtree(tree, method), "Terminal nodes|Processing node")` not to throw any warnings. Actually got a with message: The following factor score estimates failed to converge successfully: 1,62,215,390 Backtrace: ▆ 1. └─grmtree (local) test_method("WLE") at test-fscores.R:62:3 2. ├─testthat::expect_warning(...) at test-fscores.R:50:5 3. │ └─testthat:::expect_condition_matching_(...) 4. │ └─testthat:::quasi_capture(...) 5. │ ├─testthat (local) .capture(...) 6. │ │ └─base::withCallingHandlers(...) 7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 8. ├─testthat::expect_message(...) 9. │ └─testthat:::expect_condition_matching_(...) 10. │ └─testthat:::quasi_capture(...) 11. │ ├─testthat (local) .capture(...) 12. │ │ └─base::withCallingHandlers(...) 13. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 14. └─grmtree::fscores_grmtree(tree, method) 15. ├─base::tryCatch(...) 16. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 17. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 18. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 19. └─mirt::fscores(node_model, method = method) 20. ├─mirt:::fscores.internal(...) 21. └─mirt:::fscores.internal(...) 22. └─mirt (local) .local(object, ...) [ FAIL 1 | WARN 8 | SKIP 0 | PASS 198 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [0m/30m] ERROR Error(s) in re-building vignettes: ... --- re-building ‘GRMForest-implementation.Rmd’ using rmarkdown Quitting from GRMForest-implementation.Rmd:97-112 [unnamed-chunk-5] Execution halted --- re-building ‘getting-started-with-grmtree-package.Rmd’ using rmarkdown * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE