downloading reverse dependencies ‘ggfittext’, ‘ggtext’, ‘ggwordcloud’, ‘plotthis’, ‘resourcecode’, ‘SurvivalClusteringTree’, ‘forestploter’, ‘invitroTKstats’, ‘mlbplotR’, ‘tablesgg’ trying URL 'file:///data/Repositories/CRAN/src/contrib/ggfittext_0.10.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggtext_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ggwordcloud_0.6.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plotthis_0.10.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/resourcecode_0.5.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SurvivalClusteringTree_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/forestploter_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/invitroTKstats_0.0.14.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlbplotR_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tablesgg_0.9-1.tar.gz' installing dependencies ‘clustree’, ‘gglogger’, ‘ggmanh’, ‘ggupset’, ‘gridtext’, ‘iNEXT’, ‘OptimalCutpoints’, ‘resourcecodedata’ also installing the dependencies ‘SeqArray’, ‘pals’ begin installing package ‘SeqArray’ begin installing package ‘pals’ begin installing package ‘clustree’ begin installing package ‘gglogger’ begin installing package ‘ggupset’ begin installing package ‘iNEXT’ begin installing package ‘OptimalCutpoints’ begin installing package ‘resourcecodedata’ begin installing package ‘gridtext’ * installing *source* package ‘pals’ ... ** this is package ‘pals’ version ‘1.10’ ** package ‘pals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pals) * installing *source* package ‘OptimalCutpoints’ ... ** this is package ‘OptimalCutpoints’ version ‘1.1-5’ ** package ‘OptimalCutpoints’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OptimalCutpoints) * installing *source* package ‘gglogger’ ... ** this is package ‘gglogger’ version ‘0.1.7’ ** package ‘gglogger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gglogger) * installing *source* package ‘ggupset’ ... ** this is package ‘ggupset’ version ‘0.4.1’ ** package ‘ggupset’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggupset) * installing *source* package ‘clustree’ ... ** this is package ‘clustree’ version ‘0.5.1’ ** package ‘clustree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clustree) * installing *source* package ‘resourcecodedata’ ... ** this is package ‘resourcecodedata’ version ‘1.0.0’ ** package ‘resourcecodedata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (resourcecodedata) * installing *source* package ‘iNEXT’ ... ** this is package ‘iNEXT’ version ‘3.0.2’ ** package ‘iNEXT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppPnet6/R.INSTALL238dd248e46b61/iNEXT/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c subfuns.cpp -o subfuns.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o iNEXT.so RcppExports.o subfuns.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppPnet6/R.INSTALL238dd248e46b61/iNEXT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-iNEXT/00new/iNEXT/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iNEXT) * installing *source* package ‘gridtext’ ... ** this is package ‘gridtext’ version ‘0.1.6’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHxppGI/R.INSTALL238dd4581cf70d/gridtext/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bl-r-bindings.cpp -o bl-r-bindings.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid-renderer.cpp -o grid-renderer.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid.cpp -o grid.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gridtext.so RcppExports.o bl-r-bindings.o grid-renderer.o grid.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHxppGI/R.INSTALL238dd4581cf70d/gridtext/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gridtext/00new/gridtext/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridtext) * installing *source* package ‘SeqArray’ ... ** this is package ‘SeqArray’ version ‘1.50.1’ ** package ‘SeqArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQVOvwh/R.INSTALL238dc41a14c680/SeqArray/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvToGDS.cpp -o ConvToGDS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c FileMerge.cpp -o FileMerge.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GetData.cpp -o GetData.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Index.cpp -o Index.o Index.cpp: In member function ‘void SeqArray::CProgress::ShowProgress()’: Index.cpp:1273:66: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1273 | if (R_Process_StatusFName.size() < *R_Process_Count) return; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LinkSNPRelate.cpp -o LinkSNPRelate.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Methods.cpp -o Methods.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_SeqArray.c -o R_SeqArray.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ReadBySample.cpp -o ReadBySample.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ReadByUnit.cpp -o ReadByUnit.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ReadByVariant.cpp -o ReadByVariant.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SeqArray.cpp -o SeqArray.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pkg_test.cpp -o pkg_test.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c samtools_ext.c -o samtools_ext.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DUSING_R -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/gdsfmt/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vectorization.cpp -o vectorization.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQVOvwh/R.INSTALL238dc41a14c680/SeqArray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SeqArray/00new/SeqArray/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeqArray) begin installing package ‘ggmanh’ * installing *source* package ‘ggmanh’ ... ** this is package ‘ggmanh’ version ‘1.14.0’ ** package ‘ggmanh’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘binned_manhattan_plot’ with signature ‘"GRanges"’: no definition for class “GRanges” in method for ‘binned_manhattan_preprocess’ with signature ‘"GRanges"’: no definition for class “GRanges” in method for ‘manhattan_plot’ with signature ‘"GRanges"’: no definition for class “GRanges” in method for ‘manhattan_data_preprocess’ with signature ‘"GRanges"’: no definition for class “GRanges” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggmanh) checking gridtext_0.1.6.tar.gz ... checking ggfittext_0.10.3.tar.gz ... checking ggtext_0.1.2.tar.gz ... checking ggwordcloud_0.6.2.tar.gz ... checking plotthis_0.10.0.tar.gz ... checking resourcecode_0.5.3.tar.gz ... checking SurvivalClusteringTree_1.1.1.tar.gz ... checking forestploter_1.1.3.tar.gz ... checking invitroTKstats_0.0.14.tar.gz ... checking mlbplotR_1.2.0.tar.gz ... checking tablesgg_0.9-1.tar.gz ... Depends: Package: gridtext Depends: R (>= 3.5) Imports: curl, grid, grDevices, markdown, rlang, Rcpp, png, jpeg, stringr, xml2 LinkingTo: Rcpp Timings: user system elapsed gridtext 43.185 5.128 50.519 Results: Check status summary: OK Source packages 1 Reverse depends 10 Check results summary: gridtext ... OK rdepends_forestploter ... OK rdepends_ggfittext ... OK rdepends_ggtext ... OK rdepends_ggwordcloud ... OK rdepends_invitroTKstats ... OK rdepends_mlbplotR ... OK rdepends_plotthis ... OK rdepends_resourcecode ... OK rdepends_SurvivalClusteringTree ... OK rdepends_tablesgg ... OK Check results changes: Package: ggtext Check: DESCRIPTION meta-information Old result: NOTE New result: OK