R Under development (unstable) (2024-10-16 r87241 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(greenfeedr)
> 
> test_check("greenfeedr")
Please set the 'gcup' parameter based on the 10-drops test.
           If units have different gram values, define 'gcup' as a vector with an element for each unit.
Animal ID not visting GreenFeed: Animal11, Animal12, Animal13, Animal14, Animal16, Animal17, Animal18, Animal19, Animal20, Animal21, Animal22, Animal23, Animal24, Animal25, Animal26, Animal27, Animal28, Animal29, Animal30, Animal32
Pellet intakes file created and saved to D:\temp\RtmpqC5sWz
Please set the 'gcup' parameter based on the 10-drops test.
           If units have different gram values, define 'gcup' as a vector with an element for each unit.
RFID is NULL. It is recommended to include it.
Pellet intakes file created and saved to D:\temp\RtmpqC5sWz
Using param1 = 2 , param2 = 3 , min_time = 2
CH4: 392.67 +- 58.74
CH4 CV = 15%
CO2: 11630.54 +- 1421.75
CO2 CV = 12.2%
O2: 7869.98 +- 878.89
O2 CV = 11.2%
H2: NaN +- NA
H2 CV = NA%
Animal IDs not visiting GF: Animal11, Animal12, Animal13, Animal14, Animal16, Animal17, Animal18, Animal19, Animal20, Animal21, Animal22, Animal23, Animal24, Animal25, Animal26, Animal27, Animal28, Animal29, Animal30, Animal32
list(FID = 1, n = 5485)list(<environment>, <environment>)<environment><environment>list(x = ~as.factor(FID), y = ~n, fill = ~as.factor(FID))list(line = list(colour = "black", linewidth = 0.5, linetype = 1, lineend = "butt", arrow = FALSE, inherit.blank = TRUE), rect = list(fill = "white", colour = "black", linewidth = 0.5, linetype = 1, inherit.blank = TRUE), text = list(family = "", face = "plain", colour = "black", size = 11, hjust = 0.5, vjust = 0.5, angle = 0, lineheight = 0.9, margin = c(0, 0, 0, 0), debug = FALSE, inherit.blank = TRUE), title = NULL, aspect.ratio = NULL, axis.title = NULL, axis.title.x = list(family = NULL, face = NULL, 
    colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = NULL, lineheight = NULL, margin = c(2.75, 0, 0, 0), debug = NULL, inherit.blank = TRUE), axis.title.x.top = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 0, angle = NULL, lineheight = NULL, margin = c(0, 0, 2.75, 0), debug = NULL, inherit.blank = TRUE), axis.title.x.bottom = NULL, axis.title.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = 90, lineheight = NULL, 
    margin = c(0, 2.75, 0, 0), debug = NULL, inherit.blank = TRUE), axis.title.y.left = NULL, axis.title.y.right = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = -90, lineheight = NULL, margin = c(0, 0, 0, 2.75), debug = NULL, inherit.blank = TRUE), axis.text = list(family = NULL, face = NULL, colour = "grey30", size = 0.8, hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), axis.text.x = list(
    family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = NULL, lineheight = NULL, margin = c(2.2, 0, 0, 0), debug = NULL, inherit.blank = TRUE), axis.text.x.top = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 0, angle = NULL, lineheight = NULL, margin = c(0, 0, 2.2, 0), debug = NULL, inherit.blank = TRUE), axis.text.x.bottom = NULL, axis.text.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 1, vjust = NULL, 
    angle = NULL, lineheight = NULL, margin = c(0, 2.2, 0, 0), debug = NULL, inherit.blank = TRUE), axis.text.y.left = NULL, axis.text.y.right = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(0, 0, 0, 2.2), debug = NULL, inherit.blank = TRUE), axis.text.theta = NULL, axis.text.r = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0.5, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(0, 2.2, 
0, 2.2), debug = NULL, inherit.blank = TRUE), axis.ticks = list(colour = "grey20", linewidth = NULL, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), axis.ticks.x = NULL, axis.ticks.x.top = NULL, axis.ticks.x.bottom = NULL, axis.ticks.y = NULL, axis.ticks.y.left = NULL, axis.ticks.y.right = NULL, axis.ticks.theta = NULL, axis.ticks.r = NULL, axis.minor.ticks.x.top = NULL, axis.minor.ticks.x.bottom = NULL, axis.minor.ticks.y.left = NULL, axis.minor.ticks.y.right = NULL, axis.minor.ticks.theta = NULL, 
    axis.minor.ticks.r = NULL, axis.ticks.length = 2.75, axis.ticks.length.x = NULL, axis.ticks.length.x.top = NULL, axis.ticks.length.x.bottom = NULL, axis.ticks.length.y = NULL, axis.ticks.length.y.left = NULL, axis.ticks.length.y.right = NULL, axis.ticks.length.theta = NULL, axis.ticks.length.r = NULL, axis.minor.ticks.length = 0.75, axis.minor.ticks.length.x = NULL, axis.minor.ticks.length.x.top = NULL, axis.minor.ticks.length.x.bottom = NULL, axis.minor.ticks.length.y = NULL, axis.minor.ticks.length.y.left = NULL, 
    axis.minor.ticks.length.y.right = NULL, axis.minor.ticks.length.theta = NULL, axis.minor.ticks.length.r = NULL, axis.line = list(colour = "black", linewidth = 1, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), axis.line.x = NULL, axis.line.x.top = NULL, axis.line.x.bottom = NULL, axis.line.y = NULL, axis.line.y.left = NULL, axis.line.y.right = NULL, axis.line.theta = NULL, axis.line.r = NULL, legend.background = list(fill = NULL, colour = NA, linewidth = NULL, linetype = NULL, 
        inherit.blank = TRUE), legend.margin = c(5.5, 5.5, 5.5, 5.5), legend.spacing = 11, legend.spacing.x = NULL, legend.spacing.y = NULL, legend.key = NULL, legend.key.size = 1.2, legend.key.height = NULL, legend.key.width = NULL, legend.key.spacing = 5.5, legend.key.spacing.x = NULL, legend.key.spacing.y = NULL, legend.frame = NULL, legend.ticks = NULL, legend.ticks.length = 0.2, legend.axis.line = NULL, legend.text = list(family = NULL, face = NULL, colour = NULL, size = 0.8, hjust = NULL, vjust = NULL, 
        angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), legend.text.position = NULL, legend.title = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = NULL, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), legend.title.position = NULL, legend.position = "right", legend.position.inside = NULL, legend.direction = NULL, legend.byrow = NULL, legend.justification = "center", legend.justification.top = NULL, 
    legend.justification.bottom = NULL, legend.justification.left = NULL, legend.justification.right = NULL, legend.justification.inside = NULL, legend.location = NULL, legend.box = NULL, legend.box.just = NULL, legend.box.margin = c(0, 0, 0, 0), legend.box.background = list(), legend.box.spacing = 11, panel.background = list(fill = "white", colour = NA, linewidth = NULL, linetype = NULL, inherit.blank = TRUE), panel.border = list(), panel.spacing = 5.5, panel.spacing.x = NULL, panel.spacing.y = NULL, 
    panel.grid = list(colour = "grey92", linewidth = NULL, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), panel.grid.major = list(), panel.grid.minor = list(), panel.grid.major.x = NULL, panel.grid.major.y = NULL, panel.grid.minor.x = NULL, panel.grid.minor.y = NULL, panel.ontop = FALSE, plot.background = list(fill = NULL, colour = "white", linewidth = NULL, linetype = NULL, inherit.blank = TRUE), plot.title = list(family = NULL, face = NULL, colour = NULL, size = 1.2, hjust = 0, 
        vjust = 1, angle = NULL, lineheight = NULL, margin = c(0, 0, 5.5, 0), debug = NULL, inherit.blank = TRUE), plot.title.position = "panel", plot.subtitle = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = 1, angle = NULL, lineheight = NULL, margin = c(0, 0, 5.5, 0), debug = NULL, inherit.blank = TRUE), plot.caption = list(family = NULL, face = NULL, colour = NULL, size = 0.8, hjust = 1, vjust = 1, angle = NULL, lineheight = NULL, margin = c(5.5, 0, 0, 0), debug = NULL, 
        inherit.blank = TRUE), plot.caption.position = "panel", plot.tag = list(family = NULL, face = NULL, colour = NULL, size = 1.2, hjust = 0.5, vjust = 0.5, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), plot.tag.position = "topleft", plot.tag.location = NULL, plot.margin = c(5.5, 5.5, 5.5, 5.5), strip.background = list(fill = "white", colour = "black", linewidth = 2, linetype = NULL, inherit.blank = TRUE), strip.background.x = NULL, strip.background.y = NULL, 
    strip.clip = "inherit", strip.placement = "inside", strip.text = list(family = NULL, face = NULL, colour = "grey10", size = 0.8, hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(4.4, 4.4, 4.4, 4.4), debug = NULL, inherit.blank = TRUE), strip.text.x = NULL, strip.text.x.bottom = NULL, strip.text.x.top = NULL, strip.text.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = NULL, angle = -90, lineheight = NULL, margin = NULL, debug = NULL, 
        inherit.blank = TRUE), strip.text.y.left = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = NULL, angle = 90, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), strip.text.y.right = NULL, strip.switch.pad.grid = 2.75, strip.switch.pad.wrap = 2.75)<environment><environment><environment><environment>list(x = "Units", y = "Frequency", fill = "Unit", title = "TAG reads per unit", label = "n")
Animal IDs not visiting GF: Animal11, Animal12, Animal13, Animal14, Animal16, Animal17, Animal18, Animal19, Animal20, Animal21, Animal22, Animal23, Animal24, Animal25, Animal26, Animal27, Animal28, Animal29, Animal30, Animal32
list(FID = 1, n = 5485)list(<environment>, <environment>)<environment><environment>list(x = ~as.factor(FID), y = ~n, fill = ~as.factor(FID))list(line = list(colour = "black", linewidth = 0.5, linetype = 1, lineend = "butt", arrow = FALSE, inherit.blank = TRUE), rect = list(fill = "white", colour = "black", linewidth = 0.5, linetype = 1, inherit.blank = TRUE), text = list(family = "", face = "plain", colour = "black", size = 11, hjust = 0.5, vjust = 0.5, angle = 0, lineheight = 0.9, margin = c(0, 0, 0, 0), debug = FALSE, inherit.blank = TRUE), title = NULL, aspect.ratio = NULL, axis.title = NULL, axis.title.x = list(family = NULL, face = NULL, 
    colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = NULL, lineheight = NULL, margin = c(2.75, 0, 0, 0), debug = NULL, inherit.blank = TRUE), axis.title.x.top = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 0, angle = NULL, lineheight = NULL, margin = c(0, 0, 2.75, 0), debug = NULL, inherit.blank = TRUE), axis.title.x.bottom = NULL, axis.title.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = 90, lineheight = NULL, 
    margin = c(0, 2.75, 0, 0), debug = NULL, inherit.blank = TRUE), axis.title.y.left = NULL, axis.title.y.right = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = -90, lineheight = NULL, margin = c(0, 0, 0, 2.75), debug = NULL, inherit.blank = TRUE), axis.text = list(family = NULL, face = NULL, colour = "grey30", size = 0.8, hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), axis.text.x = list(
    family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 1, angle = NULL, lineheight = NULL, margin = c(2.2, 0, 0, 0), debug = NULL, inherit.blank = TRUE), axis.text.x.top = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = 0, angle = NULL, lineheight = NULL, margin = c(0, 0, 2.2, 0), debug = NULL, inherit.blank = TRUE), axis.text.x.bottom = NULL, axis.text.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 1, vjust = NULL, 
    angle = NULL, lineheight = NULL, margin = c(0, 2.2, 0, 0), debug = NULL, inherit.blank = TRUE), axis.text.y.left = NULL, axis.text.y.right = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(0, 0, 0, 2.2), debug = NULL, inherit.blank = TRUE), axis.text.theta = NULL, axis.text.r = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0.5, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(0, 2.2, 
0, 2.2), debug = NULL, inherit.blank = TRUE), axis.ticks = list(colour = "grey20", linewidth = NULL, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), axis.ticks.x = NULL, axis.ticks.x.top = NULL, axis.ticks.x.bottom = NULL, axis.ticks.y = NULL, axis.ticks.y.left = NULL, axis.ticks.y.right = NULL, axis.ticks.theta = NULL, axis.ticks.r = NULL, axis.minor.ticks.x.top = NULL, axis.minor.ticks.x.bottom = NULL, axis.minor.ticks.y.left = NULL, axis.minor.ticks.y.right = NULL, axis.minor.ticks.theta = NULL, 
    axis.minor.ticks.r = NULL, axis.ticks.length = 2.75, axis.ticks.length.x = NULL, axis.ticks.length.x.top = NULL, axis.ticks.length.x.bottom = NULL, axis.ticks.length.y = NULL, axis.ticks.length.y.left = NULL, axis.ticks.length.y.right = NULL, axis.ticks.length.theta = NULL, axis.ticks.length.r = NULL, axis.minor.ticks.length = 0.75, axis.minor.ticks.length.x = NULL, axis.minor.ticks.length.x.top = NULL, axis.minor.ticks.length.x.bottom = NULL, axis.minor.ticks.length.y = NULL, axis.minor.ticks.length.y.left = NULL, 
    axis.minor.ticks.length.y.right = NULL, axis.minor.ticks.length.theta = NULL, axis.minor.ticks.length.r = NULL, axis.line = list(colour = "black", linewidth = 1, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), axis.line.x = NULL, axis.line.x.top = NULL, axis.line.x.bottom = NULL, axis.line.y = NULL, axis.line.y.left = NULL, axis.line.y.right = NULL, axis.line.theta = NULL, axis.line.r = NULL, legend.background = list(fill = NULL, colour = NA, linewidth = NULL, linetype = NULL, 
        inherit.blank = TRUE), legend.margin = c(5.5, 5.5, 5.5, 5.5), legend.spacing = 11, legend.spacing.x = NULL, legend.spacing.y = NULL, legend.key = NULL, legend.key.size = 1.2, legend.key.height = NULL, legend.key.width = NULL, legend.key.spacing = 5.5, legend.key.spacing.x = NULL, legend.key.spacing.y = NULL, legend.frame = NULL, legend.ticks = NULL, legend.ticks.length = 0.2, legend.axis.line = NULL, legend.text = list(family = NULL, face = NULL, colour = NULL, size = 0.8, hjust = NULL, vjust = NULL, 
        angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), legend.text.position = NULL, legend.title = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = NULL, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), legend.title.position = NULL, legend.position = "right", legend.position.inside = NULL, legend.direction = NULL, legend.byrow = NULL, legend.justification = "center", legend.justification.top = NULL, 
    legend.justification.bottom = NULL, legend.justification.left = NULL, legend.justification.right = NULL, legend.justification.inside = NULL, legend.location = NULL, legend.box = NULL, legend.box.just = NULL, legend.box.margin = c(0, 0, 0, 0), legend.box.background = list(), legend.box.spacing = 11, panel.background = list(fill = "white", colour = NA, linewidth = NULL, linetype = NULL, inherit.blank = TRUE), panel.border = list(), panel.spacing = 5.5, panel.spacing.x = NULL, panel.spacing.y = NULL, 
    panel.grid = list(colour = "grey92", linewidth = NULL, linetype = NULL, lineend = NULL, arrow = FALSE, inherit.blank = TRUE), panel.grid.major = list(), panel.grid.minor = list(), panel.grid.major.x = NULL, panel.grid.major.y = NULL, panel.grid.minor.x = NULL, panel.grid.minor.y = NULL, panel.ontop = FALSE, plot.background = list(fill = NULL, colour = "white", linewidth = NULL, linetype = NULL, inherit.blank = TRUE), plot.title = list(family = NULL, face = NULL, colour = NULL, size = 1.2, hjust = 0, 
        vjust = 1, angle = NULL, lineheight = NULL, margin = c(0, 0, 5.5, 0), debug = NULL, inherit.blank = TRUE), plot.title.position = "panel", plot.subtitle = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = 0, vjust = 1, angle = NULL, lineheight = NULL, margin = c(0, 0, 5.5, 0), debug = NULL, inherit.blank = TRUE), plot.caption = list(family = NULL, face = NULL, colour = NULL, size = 0.8, hjust = 1, vjust = 1, angle = NULL, lineheight = NULL, margin = c(5.5, 0, 0, 0), debug = NULL, 
        inherit.blank = TRUE), plot.caption.position = "panel", plot.tag = list(family = NULL, face = NULL, colour = NULL, size = 1.2, hjust = 0.5, vjust = 0.5, angle = NULL, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), plot.tag.position = "topleft", plot.tag.location = NULL, plot.margin = c(5.5, 5.5, 5.5, 5.5), strip.background = list(fill = "white", colour = "black", linewidth = 2, linetype = NULL, inherit.blank = TRUE), strip.background.x = NULL, strip.background.y = NULL, 
    strip.clip = "inherit", strip.placement = "inside", strip.text = list(family = NULL, face = NULL, colour = "grey10", size = 0.8, hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, margin = c(4.4, 4.4, 4.4, 4.4), debug = NULL, inherit.blank = TRUE), strip.text.x = NULL, strip.text.x.bottom = NULL, strip.text.x.top = NULL, strip.text.y = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = NULL, angle = -90, lineheight = NULL, margin = NULL, debug = NULL, 
        inherit.blank = TRUE), strip.text.y.left = list(family = NULL, face = NULL, colour = NULL, size = NULL, hjust = NULL, vjust = NULL, angle = 90, lineheight = NULL, margin = NULL, debug = NULL, inherit.blank = TRUE), strip.text.y.right = NULL, strip.switch.pad.grid = 2.75, strip.switch.pad.wrap = 2.75)<environment><environment><environment><environment>list(x = "Units", y = "Frequency", fill = "Unit", title = "TAG reads per unit", label = "n")
[ FAIL 0 | WARN 5 | SKIP 0 | PASS 34 ]

[ FAIL 0 | WARN 5 | SKIP 0 | PASS 34 ]
> 
> proc.time()
   user  system elapsed 
   3.96    0.89    4.56