test_that("epiweek constructor and coercion to date works", { dates <- seq.Date(from = as.Date("1970-01-04"), length.out = 4, by = "week") storage.mode(dates) <- "double" # needed for R <= 4.1.3 yw4 <- new_epiweek(0:3) expect_identical(as.Date(yw4), dates) expect_identical(format(yw4), c("1970-W01", "1970-W02", "1970-W03", "1970-W04")) expect_identical(format(new_epiweek()), character()) dat <- as.Date("1900-01-01") + seq.int(from = 0L, to = 200L * 365, by = 180L) expected <- as_epiweek(dat) tmp <- as.character(expected) years <- as.integer(substr(tmp, 1L, 4L)) weeks <- as.integer(substr(tmp, 7L, 8L)) expect_identical(epiweek(years, weeks), expected) }) test_that("epiweek, pre-epoch dates work", { dates <- seq.Date(from = as.Date("1900-01-04"), length.out = 4, by = "week") storage.mode(dates) <- "double" # needed for R <= 4.1.3 dates2 <- seq.Date(from = as.Date("1900-01-04") - 28L, length.out = 4, by = "week") storage.mode(dates2) <- "double" # needed for R <= 4.1.3 expect_identical(as.Date(as_epiweek(dates)), dates - 4L) expect_identical(as.Date(as_epiweek(dates) - 4L), dates2 - 4L) }) test_that("epiweek, january 1 dates", { # january 1 dates --------------------------------------------------------- # Slightly modified version of tests from Zhian Kamvar's aweek package. # This checks that the tricky behaviour at the end/beginning of the year is # handled correctly. # Epi weeks (firstday sunday) yrs <- 2001:2019 dates <- sprintf("%d-01-01", yrs) dates <- as.Date(c(dates, NA_character_)) dates_epi <- as_epiweek(dates) epiweeks <- c(1, 1, 1, 53, 52, 1, 1, 1, 53, 52, 52, 1, 1, 1, 53, 52, 1, 1, 1, NA) epiyears <- c(2001, 2002, 2003, 2003, 2004, 2006, 2007, 2008, 2008, 2009, 2010, 2012, 2013, 2014, 2014, 2015, 2017, 2018, 2019, NA) expected <- sprintf("%d-W%02d", epiyears, epiweeks) expected[length(expected)] <- NA_character_ expect_identical(as.character(dates_epi), expected) expect_identical(dates_epi, suppressWarnings(epiweek(epiyears, epiweeks))) expect_identical( suppressWarnings(as_epiweek(as.character(dates_epi), format = "yearweek")), dates_epi ) }) test_that("epiweek, POSIXlt coercion works", { nz <- as.POSIXlt("2021-01-03 02:00:00", tz = "NZ") utc <- as.POSIXlt("2021-01-03 00:00:00", tz = "UTC") result <- as.POSIXlt(as_epiweek(nz)) expect_identical(result, utc) pos <- as.POSIXlt("2021-01-04", tz = "UTC") expect_identical(as.Date(as_epiweek(pos)), as.Date("2021-01-03")) dat <- "2021-01-03" res <- as.POSIXlt(as_epiweek(dat)) expect_s3_class(res, "POSIXlt") expect_identical(julian(res), julian(as.POSIXlt("2021-01-03", tz = "UTC"))) expect_error( as.POSIXlt(as_epiweek(dat), tz = "GMT"), " objects can only be converted to UTC. If other timezones are required, first convert to and then proceed as desired.", fixed = TRUE ) }) test_that("epiweek, POSIXct coercion works", { nz <- as.POSIXct(as.POSIXlt("2021-01-04", tz = "NZ")) dat <- as_epiweek(nz) result <- as.POSIXct(dat) expect_identical(result, as.POSIXct(as.POSIXlt("2021-01-03", tz = "UTC"))) dat <- "2021-01-04" pos <- as.POSIXct(as.POSIXlt("2021-01-04", tz = "UTC")) res7 <- as_epiweek(pos) expect_identical(as.Date(res7), as.Date("2021-01-03")) dat <- "2021-01-03" res <- as.POSIXct(as_epiweek(dat)) expect_identical(res, as.POSIXct(as.POSIXlt(dat), tz = "UTC")) expect_error( as.POSIXct(as_epiweek(dat), tz = "GMT"), " objects can only be converted to UTC. If other timezones are required, first convert to and then proceed as desired.", fixed = TRUE ) }) test_that("epiweek, character coercion works", { dat <- "2021-01-04" res <- as_epiweek(dat) expect_identical(as.Date(res), as.Date(dat) - 1L) dat <- as.factor("2021-01-04") res <- as_epiweek(dat) expect_identical(as.Date(res), as.Date(dat) - 1L) dat <- "2020-12-28" res <- as.character(as_epiweek(dat)) expect_identical(res, "2020-W53") }) test_that("as_epiweek, misc errors and warnings", { expect_error(as_epiweek("bob")) expect_error( as_epiweek(TRUE), "Not implemented for class [logical].", fixed = TRUE ) expect_warning( as_epiweek("bob", format = "yearweek"), "Some entries invalid for given `year` and `week` values. Returning these as NA.", fixed = TRUE ) }) test_that("epiweek, as.list works", { dat <- as_epiweek(c("2020-12-28", "2021-01-04")) res <- list(as_epiweek("2020-12-28"), as_epiweek("2021-01-04")) expect_identical(res, as.list(dat)) }) test_that("epiweek, accessors", { dat <- as_epiweek(as.Date("2020-12-28")) expect_identical(get_year(dat), 2020L) expect_identical(get_week(dat), 53) expect_error(get_year("bob")) expect_error(get_week("bob")) dat <- as_epiweek(Sys.Date()) expect_true(is_epiweek(dat)) expect_false(is_epiweek("bob")) }) test_that("epiweek, is_epiweek works", { dat <- as_epiweek(Sys.Date()) expect_true(is_epiweek(dat)) expect_false(is_epiweek("bob")) }) test_that("epiweek, subsetting works", { x <- Sys.Date() dat <- as_epiweek(x) + 0:1 dat <- setNames(dat, c("a", "b")) expect_identical(dat[1], c(a=as_epiweek(x))) expect_identical(dat[[2]], as_epiweek(x + 7)) dat[1] <- as_epiweek(x+14) expect_identical(dat[1], c(a=as_epiweek(x + 14))) dat[[2]] <- dat[[1]] expect_identical(dat[[2]], dat[[1]]) expect_error( dat[1] <- "bob", "Can only assign objects in to an object.", fixed = TRUE ) expect_error( dat[1] <- as_yearweek(x, 7), "Can only assign objects in to an object.", fixed = TRUE ) }) test_that("epiweek, combine works", { x <- Sys.Date() dat <- as_epiweek(x) expect_identical(c(dat, dat), as_epiweek(c(x, x))) dat2 <- as_yearweek(x, 7) expect_error( c(dat, "bob"), "Unable to combine objects with other classes.", fixed = TRUE ) expect_error( c(dat, dat2), "Unable to combine objects with other classes.", fixed = TRUE ) }) test_that("epiweek operators and math work", { # comparison operators ---------------------------------------------------- x <- Sys.Date() dat <- as_epiweek(x) expect_true(dat == dat) expect_false(dat != dat) expect_true(dat <= dat + 1) expect_true(dat >= dat - 1) expect_true(dat < dat + 1) expect_true(dat > dat - 1) expect_true(dat != dat + 1) expect_error( dat == 1, "Can only compare objects with objects.", fixed = TRUE ) # addition ---------------------------------------------------------------- x <- as.Date("2021-01-04") y <- as.Date("2021-01-03") dat1 <- as_epiweek(x) dat2 <- dat1 + 0:1 expect_identical(as.Date(dat2), c(y, y + 7)) expect_identical(dat2, 0:1 + dat1) expect_identical(+dat1, dat1) expect_error( dat1 + 1.5, "Can only add integers to objects.", fixed = TRUE ) expect_error( dat1 + dat1, "Cannot add objects to each other.", fixed = TRUE ) # subtraction ------------------------------------------------------------- x <- as.Date("2021-01-04") y <- as.Date("2021-01-03") dat1 <- as_epiweek(x) dat2 <- dat1 - 0:1 expect_identical(as.Date(dat2), c(y, y - 7)) expect_identical(as.integer(dat2 - dat1), c(0L, -1L)) expect_error( 1 - dat1, "Can only subtract from a object, not vice-versa.", fixed = TRUE ) expect_error( -dat1, "Cannot negate a object.", fixed = TRUE ) expect_error( dat1 - 1.5, "Can only subtract whole numbers and other objects from objects.", fixed = TRUE ) # Other operations error x <- as_epiweek(as.Date("2021-01-05")) expect_error(dat * 3) expect_error(dat / 3) expect_error(dat ^ 3) expect_error(dat %% 3) expect_error(dat %/% 3) expect_error(dat & 3) expect_error(dat | 3) expect_error(!dat) # Math x <- as_epiweek(as.Date("2021-01-04")) dat <- c(x + 0:1, new_epiweek(NA_integer_)) expect_identical(is.nan(dat), c(FALSE, FALSE, FALSE)) expect_identical(is.finite(dat), c(TRUE, TRUE, FALSE)) expect_identical(is.infinite(dat), c(FALSE, FALSE, FALSE)) expect_error(abs(dat)) }) test_that("epiweek, miscellaneous work", { expect_identical(new_epiweek(-1.5), new_epiweek(-2L)) expect_error(new_epiweek("bob"), "`x` must be integer.", fixed = TRUE) dat <- Sys.Date() dat <- c(dat, dat - 45L) dat <- as_epiweek(dat) expect_identical(rep(dat, 2L), c(dat, dat)) expect_identical(rep(dat, each = 2L), c(dat[[1]], dat[[1]], dat[[2]], dat[[2]])) expect_identical(unique(c(dat, dat)), dat) dat <- as_epiweek(as.Date("1970-01-04")) expect_identical( seq(dat, dat + 6L, by = 2L), new_epiweek(c(0L, 2L, 4L, 6L)) ) expect_error( seq(dat, dat + 11, by = 2.5), "`by` must be an integer of length 1.", fixed = TRUE ) expect_error( seq(dat, as.integer(dat + 11), by = 2.5), "`to` must be a object of length 1.", fixed = TRUE ) expect_identical(as.integer(new_epiweek(100L)), 100L) expect_identical(as.double(new_epiweek(100L)), 100) expect_identical(min(c(dat, dat+11)), dat) expect_identical(max(c(dat, dat+11)), dat+11) expect_identical(range(seq(dat, dat + 12, by = 2L)), c(dat, dat+12)) expect_error( any(dat), "`any()` is not supported for objects.", fixed = TRUE ) expect_identical(epiweek(1L,1L),epiweek(1.5,1.5)) expect_error(epiweek(1L), "Cannot recycle a vector of length 0:", fixed = TRUE) expect_error(epiweek(1:2,1:3), "Can only recycle vectors of length 1:", fixed = TRUE) expect_error(epiweek(year = character()), "`year` must be integer.", fixed = TRUE) expect_error(epiweek(week = character()), "`week` must be integer.", fixed = TRUE) })