* using log directory ‘/srv/hornik/tmp/CRAN/grandR.Rcheck’ * using R Under development (unstable) (2024-02-08 r85876) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘grandR/DESCRIPTION’ ... OK * this is package ‘grandR’ version ‘0.2.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/5s] NOTE Maintainer: ‘Florian Erhard ’ New maintainer: Florian Erhard Old maintainer(s): Florian Erhard * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘monocle’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘grandR’ can be installed ... [7s/7s] OK * used C compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/16s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) EstimateRegulation.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EstimateRegulation.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) FitKineticsSnapshot.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LFC.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LikelihoodRatioTest.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LikelihoodRatioTest.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LikelihoodRatioTest.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LikelihoodRatioTest.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) LikelihoodRatioTest.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Pairwise.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Pairwise.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Pairwise.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Pairwise.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) Pairwise.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PairwiseDESeq2.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PairwiseDESeq2.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PairwiseDESeq2.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PairwiseDESeq2.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PairwiseDESeq2.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) PlotGeneProgressiveTimecourse.Rd:28: Lost braces 28 | \item{type}{how to fit the model (see link{FitKinetics})} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘monocle’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/10s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [10s/6s] OK * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 4 NOTEs