* installing *source* package ‘gpboost’ ... ** using staged installation ** libs installing via 'install.libs.R' to /srv/hornik/tmp/CRAN/gpboost.Rcheck/00LOCK-gpboost/00new/gpboost CMake Deprecation Warning at CMakeLists.txt:25 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- R version passed into FindLibR.cmake: 4.4.0 -- Found LibR: WARNING: ignoring environment value of R_HOME /usr/lib/R -- LIBR_EXECUTABLE: /usr/bin/R -- LIBR_INCLUDE_DIRS: WARNING: ignoring environment value of R_HOME /usr/share/R/include -- LIBR_CORE_LIBRARY: /usr/lib/libR.so -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Performing Test MM_PREFETCH -- Performing Test MM_PREFETCH - Success -- Using _mm_prefetch -- Performing Test MM_MALLOC -- Performing Test MM_MALLOC - Success -- Using _mm_malloc -- Configuring done (1.8s) CMake Warning: Value of LIBR_HOME contained a newline; truncating CMake Warning: Value of LIBR_INCLUDE_DIRS contained a newline; truncating -- Generating done (0.0s) CMake Warning: Value of LIBR_HOME contained a newline; truncating CMake Warning: Value of LIBR_INCLUDE_DIRS contained a newline; truncating -- Build files have been written to: /srv/hornik/tmp/CRAN/gpboost.Rcheck/00_pkg_src/gpboost/src/build Building lib_gpboost [ 2%] Building C object CMakeFiles/_gpboost.dir/external_libs/CSparse/Source/cs_dfs.c.o [ 4%] Building C object CMakeFiles/_gpboost.dir/external_libs/CSparse/Source/cs_reach.c.o [ 6%] Building C object CMakeFiles/_gpboost.dir/external_libs/CSparse/Source/cs_spsolve.c.o [ 9%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/CG_utils.cpp.o [ 11%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/DF_utils.cpp.o [ 13%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/GP_utils.cpp.o [ 15%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/Vecchia_utils.cpp.o [ 18%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/re_model.cpp.o [ 20%] Building CXX object CMakeFiles/_gpboost.dir/src/GPBoost/sparse_matrix_utils.cpp.o [ 22%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/boosting/boosting.cpp.o [ 25%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/boosting/gbdt.cpp.o [ 27%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/boosting/gbdt_model_text.cpp.o [ 29%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/boosting/gbdt_prediction.cpp.o [ 31%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/boosting/prediction_early_stop.cpp.o [ 34%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/bin.cpp.o [ 36%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/config.cpp.o [ 38%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/config_auto.cpp.o [ 40%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/dataset.cpp.o [ 43%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/dataset_loader.cpp.o [ 45%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/file_io.cpp.o [ 47%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/json11.cpp.o [ 50%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/metadata.cpp.o [ 52%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/parser.cpp.o [ 54%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/train_share_states.cpp.o [ 56%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/io/tree.cpp.o [ 59%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/metric/dcg_calculator.cpp.o [ 61%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/metric/metric.cpp.o [ 63%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/network/ifaddrs_patch.cpp.o [ 65%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/network/linker_topo.cpp.o [ 68%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/network/linkers_mpi.cpp.o [ 70%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/network/linkers_socket.cpp.o [ 72%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/network/network.cpp.o [ 75%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/objective/objective_function.cpp.o [ 77%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/cuda_tree_learner.cpp.o [ 79%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/data_parallel_tree_learner.cpp.o [ 81%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/feature_parallel_tree_learner.cpp.o [ 84%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/gpu_tree_learner.cpp.o [ 86%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/linear_tree_learner.cpp.o [ 88%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/serial_tree_learner.cpp.o [ 90%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/tree_learner.cpp.o [ 93%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/treelearner/voting_parallel_tree_learner.cpp.o [ 95%] Building CXX object CMakeFiles/_gpboost.dir/src/LightGBM/c_api.cpp.o [ 97%] Building CXX object CMakeFiles/_gpboost.dir/src/gpboost_R.cpp.o [100%] Linking CXX shared library /srv/hornik/tmp/CRAN/gpboost.Rcheck/00_pkg_src/gpboost/src/lib_gpboost.so [100%] Built target _gpboost Found library file: /srv/hornik/tmp/CRAN/gpboost.Rcheck/00_pkg_src/gpboost/src/lib_gpboost.so to move to /srv/hornik/tmp/CRAN/gpboost.Rcheck/00LOCK-gpboost/00new/gpboost/libs Removing 'build/' directory ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gpboost)