* using log directory 'd:/RCompile/CRANincoming/R-devel/goldfish.Rcheck'
* using R Under development (unstable) (2024-03-11 r86098 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'goldfish/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goldfish' version '1.6.6'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'James Hollway <james.hollway@graduateinstitute.ch>'

Found the following (possibly) invalid URLs:
  URL: https://github.com/snlab-ch/goldfish/issues/ (moved to https://github.com/stocnet/goldfish/issues)
    From: DESCRIPTION
    Status: 301
    Message: Moved Permanently
  URL: https://www.codefactor.io/repository/github/stocnet/goldfish
    From: README.md
    Status: 404
    Message: Not Found
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'goldfish' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.indeg:
  function(effectFun, network, window, n1, n2)

init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.ego:
  function(effectFun, attribute, n1, n2)

init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.tertius:
  function(effectFun, network, attribute, window, n1, n2)

init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.outdeg:
  function(effectFun, network, window, n1, n2)

init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.default:
  function(effectFun, network, attribute, window, n1, n2)

init_DyNAM_rate:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_rate.nodeTrans:
  function(effectFun, network, window, n1, n2)

init_DyNAMi_rate:
  function(effectFun, network, attribute)
init_DyNAMi_rate.default:
  function(effectFun, network, attribute, groupsNetwork, window, n1,
           n2)

init_DyNAMi_choice:
  function(effectFun, network, attribute)
init_DyNAMi_choice.default:
  function(effectFun, network, attribute, groupsNetwork, window, n1,
           n2)

checkEvents:
  function(object, ...)
checkEvents.nodes.goldfish:
  function(object, events, eventsName, attribute, updateColumn,
           environment)

checkEvents:
  function(object, ...)
checkEvents.network.goldfish:
  function(object, events, eventsName, nodes, nodes2, updateColumn,
           environment)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.commonReceiver:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.nodeTrans:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.four:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.ego:
  function(effectFun, attribute, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.cycle:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.outdeg:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.inertia:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.egoAlterInt:
  function(effectFun, attribute)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.tertiusDiff:
  function(effectFun, network, attribute, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.tertius:
  function(effectFun, network, attribute, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.sim:
  function(effectFun, attribute)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.mixedCycle:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.tie:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.mixedTrans:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.mixedCommonSender:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.mixedCommonReceiver:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.indeg:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.alter:
  function(effectFun, attribute, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.trans:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.recip:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.commonSender:
  function(effectFun, network, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.default:
  function(effectFun, network, attribute, window, n1, n2)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.same:
  function(effectFun, attribute)

init_REM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_REM_choice.diff:
  function(effectFun, attribute)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.mixedTrans:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.cycle:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.outdeg:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.egoAlterInt:
  function(effectFun, attribute)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.trans:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.tertius:
  function(effectFun, network, attribute, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.indeg:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.commonReceiver:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.mixedCycle:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.recip:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.tertiusDiff:
  function(effectFun, network, attribute, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.tie:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.four:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.alter:
  function(effectFun, attribute, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.mixedCommonSender:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.default:
  function(effectFun, network, attribute, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.nodeTrans:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.sim:
  function(effectFun, attribute)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.mixedCommonReceiver:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.same:
  function(effectFun, attribute)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.commonSender:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.inertia:
  function(effectFun, network, window, n1, n2)

init_DyNAM_choice:
  function(effectFun, network, attribute, n1, n2, cache)
init_DyNAM_choice.diff:
  function(effectFun, attribute)
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [12s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] OK
  Running 'testthat.R' [12s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs