R Under development (unstable) (2024-03-05 r86054 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > ## library(gmodels) > ## library(lme4) > ## set.seed(314159) > > ## sleepstudy$dayGroup <- cut(sleepstudy$Days, seq(-1,9,by=2), include=T) > > ## # ci example > ## fm2 <- lmer(Reaction ~ dayGroup + (1|Subject) + (0+Days|Subject), sleepstudy) > ## ci(fm2) > > > ## # estimable examples > ## estimable(fm2, c( 0, -1, 1, 0, 0 ) ) # list all terms > ## estimable(fm2, c("dayGroup(1,3]"=-1, "dayGroup(3,5]"=1)) # just the nonzero terms > ## estimable(fm2, c("dayGroup(1,3]"=-1, "dayGroup(3,5]"=1), n.sim=5000 ) # more simulations... > > > ## # fit.contrast example > ## fit.contrast( fm2, "dayGroup", > ## rbind("0-1 vs 3-4"=c(-1,0,1,0,0), > ## "3-4 vs 5-6"=c(0,0,-1,1,0) > ## ), > ## conf=0.95 ) > > ## # Example from Ariel.Muldoon@oregonstate.edu > ## homerange=c( > ## "male","1","fall","0.1", > ## "male","1","winter","0.3", > ## "male","1","spring","5.2", > ## "male","1","summer","3.1", > ## "male","2","fall","3.4", > ## "male","2","winter","1.3", > ## "male","2","spring","4.8", > ## "male","2","summer","4.3", > ## "male","3","fall","3.9", > ## "male","3","winter","3.8", > ## "male","3","spring","5.7", > ## "male","3","summer","2.0", > ## "male","4","fall","3.7", > ## "male","4","winter","4.3", > ## "male","4","spring","6.0", > ## "male","4","summer","1.8", > ## "female","5","fall","4.3", > ## "female","5","winter","1.9", > ## "female","5","spring","7.2", > ## "female","5","summer","6.9", > ## "female","6","fall","5.3", > ## "female","6","winter","4.3", > ## "female","6","spring","6.2", > ## "female","6","summer","4.8", > ## "female","7","fall","7.1", > ## "female","7","winter","4.9", > ## "female","7","spring","8.3", > ## "female","7","summer","7.7" > ## ) > > ## homerange <- data.frame(matrix(homerange,ncol=4, byrow=T)) > ## names(homerange) <- c("sex", "animal", "season", "area") > ## homerange$area = as.numeric(as.character(homerange$area)) > > ## fit1 <- lmer(area ~ sex*season + (1|animal), data=homerange) > ## summary(fit1) > ## anova(fit1) > > > ## #matrix to give estimable for making estimates > > ## spr <- rbind(c(1,0,1,0,0,0,0,0), > ## c(1,1,0,0,0,1,0,0), > ## c(1,0,0,1,0,0,0,0), > ## c(1,1,0,0,0,0,1,0), > ## c(1,0,0,0,1,0,0,0), > ## c(1,1,0,0,0,0,0,1)) > > > ## estimable(fit1, spr) > > proc.time() user system elapsed 0.17 0.07 0.23