* installing *source* package ‘glmmrBase’ ...
** using staged installation
Warning in .warning_nowrite(file.path(basename(pkgdir), ...)) :
  'glmmrBase/src/Makevars' already exists.  Not overwritten by rstantools.FALSE
Calls: <Anonymous> ... .setup_Makevars -> .add_stanfile -> .warning_nowrite
** libs
using C++ compiler: ‘Debian clang version 17.0.6 (5)’
using C++17


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
21 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c covariance_module.cpp -o covariance_module.o
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Covariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Covariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::nngpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::nngpCovariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::hsgpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::hsgpCovariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from covariance_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
43 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c linpred_module.cpp -o linpred_module.o
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::LinearPredictor' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::LinearPredictor>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from linpred_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
41 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c model_module.cpp -o model_module.o
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
41 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c model_module_2.cpp -o model_module_2.o
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module_2.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
39 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c model_module_extension.cpp -o model_module_extension.o
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::nngpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::nngpCovariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::hsgpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::hsgpCovariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
42 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c openmp_utils.cpp -o openmp_utils.o
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
openmp_utils.cpp:18:9: warning: variable 'a' set but not used [-Wunused-but-set-variable]
   18 |     int a, b; // needed for defines on machines without openmp
      |         ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from openmp_utils.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
41 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c other_functions.cpp -o other_functions.o
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:16:9: warning: 'EIGEN_HAS_STD_RESULT_OF' macro redefined [-Wmacro-redefined]
   16 | #define EIGEN_HAS_STD_RESULT_OF 0 // This has no effect with RcppEigen as it has Eigen <0.3.4
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:394:9: note: previous definition is here
  394 | #define EIGEN_HAS_STD_RESULT_OF 1
      |         ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:415:10: warning: unused variable 'val' [-Wunused-variable]
  415 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:625:10: warning: unused variable 'mem' [-Wunused-variable]
  625 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:626:7: warning: unused variable 'nz' [-Wunused-variable]
  626 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:787:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  787 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN/Library/SparseChol/include/sparsematrix.h:815:19: warning: unused variable 'ilast' [-Wunused-variable]
  815 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:32:
In file included from /srv/hornik/tmp/CRAN/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
../inst/include/glmmr/general.h:247:11: warning: unused variable 'a' [-Wunused-variable]
  247 |     float a = std::stod(s);
      |           ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:4:
In file included from ../inst/include/glmmr/modelbits.hpp:6:
../inst/include/glmmr/nngpcovariance.hpp:381:14: warning: unused variable 'av' [-Wunused-variable]
  381 |   double au, av, qf;
      |              ^~
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
../inst/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
../inst/include/glmmr/modeloptim.hpp:173:10: warning: unused variable 'old_ll' [-Wunused-variable]
  173 |   double old_ll = log_likelihood_beta(start);
      |          ^~~~~~
../inst/include/glmmr/modeloptim.hpp:227:10: warning: unused variable 'old_ll' [-Wunused-variable]
  227 |   double old_ll = log_likelihood_theta(start);
      |          ^~~~~~
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:3:
In file included from ../inst/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
In file included from ../inst/include/glmmr/optim/optim.h:15:
In file included from ../inst/include/glmmr/optim/bobyqa_algo.h:201:
../inst/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from other_functions.cpp:1:
In file included from ../inst/include/glmmr.h:8:
In file included from ../inst/include/glmmr/model.hpp:8:
In file included from ../inst/include/glmmr/modeloptim.hpp:12:
../inst/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
40 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_bernoulli.cc -o stanExports_mcml_bernoulli.o
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_bernoulli.cc:5:
./stanExports_mcml_bernoulli.h:269:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  269 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_bernoulli.h:306:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  306 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_bernoulli.h:332:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  332 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_bernoulli.cc:5:
In file included from ./stanExports_mcml_bernoulli.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_beta.cc -o stanExports_mcml_beta.o
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_beta.cc:5:
./stanExports_mcml_beta.h:262:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  262 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_beta.h:313:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  313 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_beta.h:339:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  339 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_beta.cc:5:
In file included from ./stanExports_mcml_beta.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_binomial.cc -o stanExports_mcml_binomial.o
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_binomial.cc:5:
./stanExports_mcml_binomial.h:282:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  282 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_binomial.h:319:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  319 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_binomial.h:345:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  345 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_binomial.cc:5:
In file included from ./stanExports_mcml_binomial.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_gamma.cc -o stanExports_mcml_gamma.o
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_gamma.cc:5:
./stanExports_mcml_gamma.h:276:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  276 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_gamma.h:313:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  313 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_gamma.h:339:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  339 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_gamma.cc:5:
In file included from ./stanExports_mcml_gamma.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_gaussian.cc -o stanExports_mcml_gaussian.o
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_gaussian.cc:5:
./stanExports_mcml_gaussian.h:265:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  265 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_gaussian.h:302:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  302 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_gaussian.h:328:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  328 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_gaussian.cc:5:
In file included from ./stanExports_mcml_gaussian.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DRCPP_PARALLEL_USE_TBB=1  -D_HAS_AUTO_PTR_ETC=0  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/CRAN/Library/SparseChol/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS    -fpic  -g -O3 -Wall -pedantic  -c stanExports_mcml_poisson.cc -o stanExports_mcml_poisson.o
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:540:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:2:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/LU:47:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:12:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Jacobi:29:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Householder:27:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/QR:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:5:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SVD:48:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Geometry:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:58:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:66:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:71:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCholesky:43:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseQR:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:33:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   47 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual]
   70 |       virtual std::streamsize xsputn(const char_type* s, const int n) {
      |                               ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf<char>::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int')
  749 |       xsputn(const char_type* __s, streamsize __n);
      |       ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:36:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  239 |   int count = 0;
      |       ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
   14 |     #pragma clang diagnostic pop
      |                                 ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
   57 | struct ops_partials_edge<ViewElt, Op, require_st_arithmetic<Op>> {
      | ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here?
   45 | class ops_partials_edge;
      | ^~~~~
      | struct
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
   49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
   75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
   99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
      |          ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
   28 |      <boost/typeof/incr_registration_group.hpp>
      |             ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
 1252 |     int ret = stan::services::error_codes::CONFIG;
      |         ^
In file included from stanExports_mcml_poisson.cc:5:
./stanExports_mcml_poisson.h:235:20: warning: unused variable 'jacobian__' [-Wunused-variable]
  235 |     constexpr bool jacobian__ = false;
      |                    ^~~~~~~~~~
./stanExports_mcml_poisson.h:272:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  272 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
./stanExports_mcml_poisson.h:298:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable]
  298 |       int pos__ = std::numeric_limits<int>::min();
      |           ^
In file included from stanExports_mcml_poisson.cc:5:
In file included from ./stanExports_mcml_poisson.h:23:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<double>::temme_root_finder' requested here
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<double, boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>>>' requested here
  992 |    rx = detail::ibeta_inv_imp(
      |                 ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
 1023 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), pol);
      |           ^
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv<double, double, double, boost::math::policies::policy<boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_double<false>, boost::math::policies::digits2<>>>' requested here
   32 |   return boost::math::ibeta_inv(a, b, p, boost_policy_t<>());
      |                       ^
37 warnings generated.
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o glmmrBase.so RcppExports.o covariance_module.o linpred_module.o model_module.o model_module_2.o model_module_extension.o openmp_utils.o other_functions.o stanExports_mcml_bernoulli.o stanExports_mcml_beta.o stanExports_mcml_binomial.o stanExports_mcml_gamma.o stanExports_mcml_gaussian.o stanExports_mcml_poisson.o -L/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -llapack -L/home/hornik/tmp/R-d-clang-17/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-17/lib -lR
installing to /srv/hornik/tmp/CRAN/glmmrBase.Rcheck/00LOCK-glmmrBase/00new/glmmrBase/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmrBase)