* using log directory ‘/home/hornik/tmp/CRAN_special_gcc-san/glmmrBase.Rcheck’ * using R Under development (unstable) (2024-12-10 r87437) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-8) 14.2.0 GNU Fortran (Debian 14.2.0-8) 14.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘glmmrBase/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘glmmrBase’ version ‘0.11.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘glmmrBase’ can be installed ... [15m/15m] OK * used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ * checking C++ specification ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [21s/21s] OK * checking whether the package can be loaded with stated dependencies ... [21s/21s] OK * checking whether the package can be unloaded cleanly ... [21s/21s] OK * checking whether the namespace can be loaded with stated dependencies ... [20s/20s] OK * checking whether the namespace can be unloaded cleanly ... [21s/21s] OK * checking loading without being on the library search path ... [21s/21s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [98s/98s] OK * checking Rd files ... [2s/2s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [32s/32s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Model 5.096 0.156 5.254 * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [5s/5s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK