installing dependencies ‘BH’, ‘R6’, ‘Rcpp’, ‘RcppEigen’, ‘RcppParallel’, ‘rstan’, ‘rstantools’, ‘SparseChol’, ‘StanHeaders’ also installing the dependencies ‘utf8’, ‘generics’, ‘numDeriv’, ‘colorspace’, ‘backports’, ‘abind’, ‘tensorA’, ‘pillar’, ‘distributional’, ‘ps’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘viridisLite’, ‘fansi’, ‘magrittr’, ‘pkgconfig’, ‘gtable’, ‘checkmate’, ‘matrixStats’, ‘posterior’, ‘callr’, ‘cli’, ‘processx’, ‘glue’, ‘isoband’, ‘lifecycle’, ‘rlang’, ‘scales’, ‘tibble’, ‘vctrs’, ‘withr’, ‘inline’, ‘gridExtra’, ‘loo’, ‘pkgbuild’, ‘QuickJSR’, ‘ggplot2’, ‘desc’ begin installing package ‘utf8’ begin installing package ‘generics’ begin installing package ‘numDeriv’ begin installing package ‘colorspace’ begin installing package ‘backports’ begin installing package ‘abind’ begin installing package ‘tensorA’ begin installing package ‘ps’ begin installing package ‘farver’ begin installing package ‘labeling’ begin installing package ‘RColorBrewer’ begin installing package ‘viridisLite’ begin installing package ‘fansi’ begin installing package ‘magrittr’ begin installing package ‘pkgconfig’ begin installing package ‘matrixStats’ begin installing package ‘cli’ begin installing package ‘glue’ begin installing package ‘isoband’ begin installing package ‘rlang’ begin installing package ‘withr’ begin installing package ‘inline’ begin installing package ‘QuickJSR’ begin installing package ‘Rcpp’ begin installing package ‘R6’ begin installing package ‘BH’ begin installing package ‘RcppParallel’ * installing *source* package ‘viridisLite’ ... ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) * installing *source* package ‘pkgconfig’ ... ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) * installing *source* package ‘numDeriv’ ... ** package ‘numDeriv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (numDeriv) * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpnd6K3b/R.INSTALL374d41463c7a1/magrittr/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpnd6K3b/R.INSTALL374d41463c7a1/magrittr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) * installing *source* package ‘labeling’ ... ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) * installing *source* package ‘generics’ ... ** package ‘generics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) * installing *source* package ‘abind’ ... ** package ‘abind’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) * installing *source* package ‘RColorBrewer’ ... ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) * installing *source* package ‘backports’ ... ** package ‘backports’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIjxtfF/R.INSTALL374d1520d9f9da/backports/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dotsElt.c -o dotsElt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dotsLength.c -o dotsLength.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dotsNames.c -o dotsNames.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o backports.so dotsElt.o dotsLength.o dotsNames.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIjxtfF/R.INSTALL374d1520d9f9da/backports/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-backports/00new/backports/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (backports) begin installing package ‘checkmate’ * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVgsY5q/R.INSTALL374d575447b2ad/glue/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVgsY5q/R.INSTALL374d575447b2ad/glue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) * installing *source* package ‘inline’ ... ** package ‘inline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inline) * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) * installing *source* package ‘tensorA’ ... ** package ‘tensorA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmppjz08O/R.INSTALL374d2f1c34d96b/tensorA/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tensora.c -o tensora.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tensorA.so tensora.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmppjz08O/R.INSTALL374d2f1c34d96b/tensorA/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tensorA/00new/tensorA/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tensorA) * installing *source* package ‘utf8’ ... ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptElDJv/R.INSTALL374d0a4566b19/utf8/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c as_utf8.c -o as_utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c bytes.c -o bytes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c context.c -o context.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render.c -o render.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render_table.c -o render_table.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c string.c -o string.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c text.c -o text.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_encode.c -o utf8_encode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_format.c -o utf8_format.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_normalize.c -o utf8_normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_valid.c -o utf8_valid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_width.c -o utf8_width.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c util.c -o util.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/array.c -o utf8lite/src/array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/char.c -o utf8lite/src/char.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/encode.c -o utf8lite/src/encode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/error.c -o utf8lite/src/error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/escape.c -o utf8lite/src/escape.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graph.c -o utf8lite/src/graph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/render.c -o utf8lite/src/render.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/text.c -o utf8lite/src/text.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptElDJv/R.INSTALL374d0a4566b19/utf8/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) * installing *source* package ‘fansi’ ... ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpehxGEx/R.INSTALL374d454b045990/fansi/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assumptions.c -o assumptions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c carry.c -o carry.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c has.c -o has.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nchar.c -o nchar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c normalize.c -o normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rnchar.c -o rnchar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c state.c -o state.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c strip.c -o strip.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c substr.c -o substr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tabs.c -o tabs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tohtml.c -o tohtml.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trimws.c -o trimws.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unhandled.c -o unhandled.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrap.c -o wrap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpehxGEx/R.INSTALL374d454b045990/fansi/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) * installing *source* package ‘isoband’ ... ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6YoHH9/R.INSTALL374d5c50227e5d/isoband/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c clip-lines.cpp -o clip-lines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c isoband.cpp -o isoband.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c polygon.cpp -o polygon.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c separate-polygons.cpp -o separate-polygons.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-clip-lines.cpp -o test-clip-lines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-runner.cpp -o test-runner.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-separate-polygons.cpp -o test-separate-polygons.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6YoHH9/R.INSTALL374d5c50227e5d/isoband/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) * installing *source* package ‘ps’ ... ** package ‘ps’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptpBEfj/R.INSTALL374d2321825ffe/ps/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall px.c -o px clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-common.c -o api-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c common.c -o common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extra.c -o extra.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error-codes.c -o error-codes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c posix.c -o posix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-posix.c -o api-posix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c linux.c -o linux.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-linux.c -o api-linux.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o cleancall.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptpBEfj/R.INSTALL374d2321825ffe/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ps/00new/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ps) begin installing package ‘processx’ * installing *source* package ‘checkmate’ ... ** package ‘checkmate’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWGZ2rk/R.INSTALL37535e403d437d/checkmate/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c all_missing.c -o all_missing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c any_infinite.c -o any_infinite.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c any_missing.c -o any_missing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c any_nan.c -o any_nan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c checks.c -o checks.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c find_nchar.c -o find_nchar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c guess_type.c -o guess_type.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c helper.c -o helper.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integerish.c -o integerish.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c is_sorted.c -o is_sorted.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c qassert.c -o qassert.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c which_first.c -o which_first.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o checkmate.so all_missing.o any_infinite.o any_missing.o any_nan.o checks.o find_nchar.o guess_type.o helper.o init.o integerish.o is_sorted.o qassert.o which_first.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWGZ2rk/R.INSTALL37535e403d437d/checkmate/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-checkmate/00new/checkmate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (checkmate) * installing *source* package ‘colorspace’ ... ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDpjQX0/R.INSTALL374d0b6c818297/colorspace/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDpjQX0/R.INSTALL374d0b6c818297/colorspace/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) begin installing package ‘munsell’ * installing *source* package ‘processx’ ... ** package ‘processx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptzlNNm/R.INSTALL3754e21b83af7c/processx/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall tools/px.c -o tools/px clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c client.c -o client.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L"/home/hornik/tmp/R-d-clang-xtra/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-clang-xtra/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c poll.c -o poll.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-connection.c -o processx-connection.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-vector.c -o processx-vector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c create-time.c -o create-time.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/childlist.c -o unix/childlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/connection.c -o unix/connection.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/processx.c -o unix/processx.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/sigchld.c -o unix/sigchld.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/utils.c -o unix/utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/named_pipe.c -o unix/named_pipe.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptzlNNm/R.INSTALL3754e21b83af7c/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) begin installing package ‘callr’ * installing *source* package ‘munsell’ ... ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDjNvrx/R.INSTALL374d54661cdfe0/cli/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -lpthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDjNvrx/R.INSTALL374d54661cdfe0/cli/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) begin installing package ‘desc’ * installing *source* package ‘matrixStats’ ... ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWgZceU/R.INSTALL374d4a3bad2d69/matrixStats/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 000.init.c -o 000.init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c allocMatrix2.c -o allocMatrix2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binCounts.c -o binCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binMeans.c -o binMeans.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colCounts.c -o colCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colOrderStats.c -o colOrderStats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colRanges.c -o colRanges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff2.c -o diff2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c indexByRow.c -o indexByRow.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logSumExp.c -o logSumExp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mean2.c -o mean2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c naming.c -o naming.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c productExpSumLog.c -o productExpSumLog.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c psortKM.c -o psortKM.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCounts.c -o rowCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummaxs.c -o rowCummaxs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummins.c -o rowCummins.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumprods.c -o rowCumprods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumsums.c -o rowCumsums.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowDiffs.c -o rowDiffs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowLogSumExp.c -o rowLogSumExp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMads.c -o rowMads.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMeans2.c -o rowMeans2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowOrderStats.c -o rowOrderStats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanges.c -o rowRanges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanksWithTies.c -o rowRanksWithTies.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowSums2.c -o rowSums2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowVars.c -o rowVars.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signTabulate.c -o signTabulate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sum2.c -o sum2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c validateIndices.c -o validateIndices.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMean.c -o weightedMean.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMedian.c -o weightedMedian.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x_OP_y.c -o x_OP_y.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWgZceU/R.INSTALL374d4a3bad2d69/matrixStats/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7kE8gm/R.INSTALL374d5a406d91c4/rlang/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7kE8gm/R.INSTALL374d5a406d91c4/rlang/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘lifecycle’ * installing *source* package ‘desc’ ... ** package ‘desc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) * installing *source* package ‘RcppParallel’ ... ** package ‘RcppParallel’ successfully unpacked and MD5 sums checked ** using staged installation ** preparing to configure package 'RcppParallel' ... *** configured file: 'R/tbb-autodetected.R.in' => 'R/tbb-autodetected.R' *** configured file: 'src/Makevars.in' => 'src/Makevars' *** configured file: 'src/install.libs.R.in' => 'src/install.libs.R' ** finished configure for package 'RcppParallel' ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbqGzhP/R.INSTALL374d6828c341bb/RcppParallel/src' (tbb) Building TBB using bundled sources ... make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpbqGzhP/R.INSTALL374d6828c341bb/RcppParallel/src/tbb/src' OS: linux arch=intel64 compiler=gcc runtime=cc14.2.0_libc2.40_kernel6.11.10 tbb_build_prefix=linux_intel64_gcc_cc14.2.0_libc2.40_kernel6.11.10 work_dir=/home/hornik/tmp/scratch/RtmpbqGzhP/R.INSTALL374d6828c341bb/RcppParallel/src/build/linux_intel64_gcc_cc14.2.0_libc2.40_kernel6.11.10_release make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpbqGzhP/R.INSTALL374d6828c341bb/RcppParallel/src/tbb/src' (tbb) TBB compilation finished successfully. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O3 -Wall -pedantic -c options.cpp -o options.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppParallel.so init.o options.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbqGzhP/R.INSTALL374d6828c341bb/RcppParallel/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppParallel/00new/RcppParallel ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppParallel) * installing *source* package ‘callr’ ... ** package ‘callr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) begin installing package ‘pkgbuild’ * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) begin installing package ‘gtable’ begin installing package ‘vctrs’ * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxyPhwv/R.INSTALL374d625e394412/Rcpp/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.cpp -o api.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c date.cpp -o date.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c module.cpp -o module.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxyPhwv/R.INSTALL374d625e394412/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘RcppEigen’ begin installing package ‘rstantools’ * installing *source* package ‘gtable’ ... ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) begin installing package ‘gridExtra’ * installing *source* package ‘rstantools’ ... ** package ‘rstantools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstantools) * installing *source* package ‘pkgbuild’ ... ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) * installing *source* package ‘BH’ ... ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) * installing *source* package ‘gridExtra’ ... ** package ‘gridExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridExtra) * installing *source* package ‘farver’ ... ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAcmaNL/R.INSTALL374d3d654c7ad6/farver/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ColorSpace.cpp -o ColorSpace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Comparison.cpp -o Comparison.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Conversion.cpp -o Conversion.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c encode.cpp -o encode.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c farver.cpp -o farver.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAcmaNL/R.INSTALL374d3d654c7ad6/farver/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) begin installing package ‘scales’ * installing *source* package ‘QuickJSR’ ... ** package ‘QuickJSR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwkHGhE/R.INSTALL374d6029d56c48/QuickJSR/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include/" -I"../inst/include/quickjs" -D_GNU_SOURCE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -funsigned-char -std=gnu11 -c libquickjs.c In file included from libquickjs.c:5: ./quickjs/quickjs.c:7612:10: warning: variable 'atom1_is_integer' set but not used [-Wunused-but-set-variable] 7612 | BOOL atom1_is_integer, atom2_is_integer; | ^ ./quickjs/quickjs.c:7612:28: warning: variable 'atom2_is_integer' set but not used [-Wunused-but-set-variable] 7612 | BOOL atom1_is_integer, atom2_is_integer; | ^ ./quickjs/quickjs.c:53970:17: warning: variable 's' set but not used [-Wunused-but-set-variable] 53970 | JSMapState *s; | ^ In file included from libquickjs.c:6: ./quickjs/quickjs-libc.c:97:9: warning: 'MAX_SAFE_INTEGER' macro redefined [-Wmacro-redefined] 97 | #define MAX_SAFE_INTEGER (((int64_t) 1 << 53) - 1) | ^ ./quickjs/quickjs.c:10999:9: note: previous definition is here 10999 | #define MAX_SAFE_INTEGER (((int64_t)1 << 53) - 1) | ^ 4 warnings generated. ar -rs ../inst/lib//libquickjs.a libquickjs.o ar: creating ../inst/lib//libquickjs.a clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include/" -I"../inst/include/quickjs" -D_GNU_SOURCE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c quickjsr.cpp -o quickjsr.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include/" -I"../inst/include/quickjs" -D_GNU_SOURCE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o QuickJSR.so quickjsr.o init.o ../inst/lib//libquickjs.a -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwkHGhE/R.INSTALL374d6029d56c48/QuickJSR/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-QuickJSR/00new/QuickJSR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QuickJSR) * installing *source* package ‘scales’ ... ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘vctrs’ ... ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp53Rgr1/R.INSTALL37581d202cf6ce/vctrs/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-lazy-character.c -o altrep-lazy-character.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-rle.c -o altrep-rle.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep.c -o altrep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg-counter.c -o arg-counter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg.c -o arg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assert.c -o assert.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c bind.c -o bind.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c-unchop.c -o c-unchop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c.c -o c.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callables.c -o callables.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-bare.c -o cast-bare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-dispatch.c -o cast-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast.c -o cast.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c compare.c -o compare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c complete.c -o complete.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dictionary.c -o dictionary.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dim.c -o dim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c empty.c -o empty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c equal.c -o equal.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c expand.c -o expand.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fields.c -o fields.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fill.c -o fill.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c globals.c -o globals.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c group.c -o group.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c growable.c -o growable.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interval.c -o interval.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match-joint.c -o match-joint.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match.c -o match.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c missing.c -o missing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c names.c -o names.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-collate.c -o order-collate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-groups.c -o order-groups.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-sortedness.c -o order-sortedness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-truelength.c -o order-truelength.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order.c -o order.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c poly-op.c -o poly-op.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy-restore.c -o proxy-restore.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy.c -o proxy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype-common.c -o ptype-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype.c -o ptype.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2-dispatch.c -o ptype2-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2.c -o ptype2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rank.c -o rank.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rep.c -o rep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang-dev.c -o rlang-dev.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c runs.c -o runs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c set.c -o set.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c shape.c -o shape.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size-common.c -o size-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size.c -o size.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-array.c -o slice-array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign-array.c -o slice-assign-array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign.c -o slice-assign.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-chop.c -o slice-chop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-interleave.c -o slice-interleave.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice.c -o slice.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript-loc.c -o subscript-loc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript.c -o subscript.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c translate.c -o translate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-data-frame.c -o type-data-frame.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-date-time.c -o type-date-time.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-factor.c -o type-factor.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-info.c -o type-info.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-integer64.c -o type-integer64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-tibble.c -o type-tibble.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2-s3.c -o typeof2-s3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2.c -o typeof2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unspecified.c -o unspecified.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils-dispatch.c -o utils-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vctrs-core.c -o vctrs-core.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp53Rgr1/R.INSTALL37581d202cf6ce/vctrs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) begin installing package ‘pillar’ * installing *source* package ‘pillar’ ... ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) begin installing package ‘distributional’ begin installing package ‘tibble’ * installing *source* package ‘RcppEigen’ ... ** package ‘RcppEigen’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptVoGvU/R.INSTALL37586a76497ae1/RcppEigen/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c RcppEigen.cpp -o RcppEigen.o In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c fastLm.cpp -o fastLm.o In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptVoGvU/R.INSTALL37586a76497ae1/RcppEigen/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppEigen/00new/RcppEigen/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppEigen) begin installing package ‘SparseChol’ begin installing package ‘StanHeaders’ * installing *source* package ‘tibble’ ... ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp88yryk/R.INSTALL375b88190c894a/tibble/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.c -o attributes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrixToDataFrame.c -o matrixToDataFrame.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp88yryk/R.INSTALL375b88190c894a/tibble/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) begin installing package ‘ggplot2’ * installing *source* package ‘distributional’ ... ** package ‘distributional’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distributional) begin installing package ‘posterior’ * installing *source* package ‘posterior’ ... ** package ‘posterior’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (posterior) begin installing package ‘loo’ * installing *source* package ‘SparseChol’ ... ** package ‘SparseChol’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpaz9lWN/R.INSTALL375c0353be6217/SparseChol/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:3: In file included from ./../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:3: In file included from ./../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:3: In file included from ./../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:3: In file included from ./../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:3: ./../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] 145 | int x ; | ^ ./../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable] 437 | double val; | ^~~ ./../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable] 647 | double mem = 0; | ^~~ ./../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable] 648 | int nz = Ap.back(); | ^~ ./../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] 809 | int ncmpa = 0 ; | ^ ./../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable] 837 | int deg, inext, ilast; | ^~~~~ In file included from RcppExports.cpp:4: In file included from ./../inst/include/SparseChol.h:4: ./../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] 14 | double val; | ^~~ 12 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c chol.cpp -o chol.o In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:3: ../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] 145 | int x ; | ^ ../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable] 437 | double val; | ^~~ ../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable] 647 | double mem = 0; | ^~~ ../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable] 648 | int nz = Ap.back(); | ^~ ../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] 809 | int ncmpa = 0 ; | ^ ../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable] 837 | int deg, inext, ilast; | ^~~~~ In file included from chol.cpp:1: In file included from ../inst/include/SparseChol.h:4: ../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] 14 | double val; | ^~~ chol.cpp:75:7: warning: unused variable 'd' [-Wunused-variable] 75 | int d = chol.ldl_numeric(); | ^ 13 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test.cpp -o test.o In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:3: In file included from ../inst/include/sparsematrix.h:44: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:3: ../inst/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable] 145 | int x ; | ^ ../inst/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable] 437 | double val; | ^~~ ../inst/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable] 647 | double mem = 0; | ^~~ ../inst/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable] 648 | int nz = Ap.back(); | ^~ ../inst/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable] 809 | int ncmpa = 0 ; | ^ ../inst/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable] 837 | int deg, inext, ilast; | ^~~~~ In file included from test.cpp:1: In file included from ../inst/include/SparseChol.h:4: ../inst/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable] 14 | double val; | ^~~ 12 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o SparseChol.so RcppExports.o chol.o test.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpaz9lWN/R.INSTALL375c0353be6217/SparseChol/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-SparseChol/00new/SparseChol/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseChol) * installing *source* package ‘loo’ ... ** package ‘loo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loo) * installing *source* package ‘StanHeaders’ ... ** package ‘StanHeaders’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKZvriD/R.INSTALL375c052ccb5b5d/StanHeaders/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodea.c -o cvodes/cvodea.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodea_io.c -o cvodes/cvodea_io.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes.c -o cvodes/cvodes.o cvodes/cvodes.c:9137:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 9137 | CVodeMem cv_mem; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_bandpre.c -o cvodes/cvodes_bandpre.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_bbdpre.c -o cvodes/cvodes_bbdpre.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_diag.c -o cvodes/cvodes_diag.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_direct.c -o cvodes/cvodes_direct.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_io.c -o cvodes/cvodes_io.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_ls.c -o cvodes/cvodes_ls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_nls.c -o cvodes/cvodes_nls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_nls_sim.c -o cvodes/cvodes_nls_sim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_nls_stg.c -o cvodes/cvodes_nls_stg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_nls_stg1.c -o cvodes/cvodes_nls_stg1.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cvodes/cvodes_spils.c -o cvodes/cvodes_spils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_band.c -o sundials/sundials_band.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_context.c -o sundials/sundials_context.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_dense.c -o sundials/sundials_dense.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_direct.c -o sundials/sundials_direct.o sundials/sundials_direct.c:387:14: warning: variable 'a' set but not used [-Wunused-but-set-variable] 387 | realtype **a; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_futils.c -o sundials/sundials_futils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_iterative.c -o sundials/sundials_iterative.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_linearsolver.c -o sundials/sundials_linearsolver.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_math.c -o sundials/sundials_math.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_matrix.c -o sundials/sundials_matrix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_memory.c -o sundials/sundials_memory.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_nonlinearsolver.c -o sundials/sundials_nonlinearsolver.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_nvector.c -o sundials/sundials_nvector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_nvector_senswrapper.c -o sundials/sundials_nvector_senswrapper.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_profiler.c -o sundials/sundials_profiler.o sundials/sundials_profiler.c:437:10: warning: unused variable 'average' [-Wunused-variable] 437 | double average = ts->average; | ^~~~~~~ sundials/sundials_profiler.c:438:10: warning: unused variable 'percent' [-Wunused-variable] 438 | double percent = strcmp((const char*) kv->key, (const char*) SUNDIALS_ROOT_TIMER) ? maximum / p->sundials_time * 100 : 100; | ^~~~~~~ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sundials/sundials_version.c -o sundials/sundials_version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunmatrix/band/sunmatrix_band.c -o sunmatrix/band/sunmatrix_band.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunmatrix/dense/sunmatrix_dense.c -o sunmatrix/dense/sunmatrix_dense.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunlinsol/band/sunlinsol_band.c -o sunlinsol/band/sunlinsol_band.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunlinsol/dense/sunlinsol_dense.c -o sunlinsol/dense/sunlinsol_dense.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunnonlinsol/newton/sunnonlinsol_newton.c -o sunnonlinsol/newton/sunnonlinsol_newton.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idaa.c -o idas/idaa.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idaa_io.c -o idas/idaa_io.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas.c -o idas/idas.o idas/idas.c:7918:10: warning: variable 'IDA_mem' set but not used [-Wunused-but-set-variable] 7918 | IDAMem IDA_mem; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_bbdpre.c -o idas/idas_bbdpre.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_direct.c -o idas/idas_direct.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_ic.c -o idas/idas_ic.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_io.c -o idas/idas_io.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_ls.c -o idas/idas_ls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_nls.c -o idas/idas_nls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_nls_sim.c -o idas/idas_nls_sim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_nls_stg.c -o idas/idas_nls_stg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idas/idas_spils.c -o idas/idas_spils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol.c -o kinsol/kinsol.o kinsol/kinsol.c:2373:10: warning: variable 'kin_mem' set but not used [-Wunused-but-set-variable] 2373 | KINMem kin_mem; | ^ kinsol/kinsol.c:2445:10: warning: variable 'kin_mem' set but not used [-Wunused-but-set-variable] 2445 | KINMem kin_mem; | ^ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol_bbdpre.c -o kinsol/kinsol_bbdpre.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol_direct.c -o kinsol/kinsol_direct.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol_io.c -o kinsol/kinsol_io.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol_ls.c -o kinsol/kinsol_ls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kinsol/kinsol_spils.c -o kinsol/kinsol_spils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -I"sundials" -include stan_sundials_printf_override.hpp -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -DSTRICT_R_HEADERS -DUSE_PTHREAD -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nvector/serial/nvector_serial.c -o nvector/serial/nvector_serial.o nvector/serial/nvector_serial.c:257:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] 257 | realtype *xd; | ^ 1 warning generated. ar -rs ../lib/libStanHeaders.a cvodes/cvodea.o cvodes/cvodea_io.o cvodes/cvodes.o cvodes/cvodes_bandpre.o cvodes/cvodes_bbdpre.o cvodes/cvodes_diag.o cvodes/cvodes_direct.o cvodes/cvodes_io.o cvodes/cvodes_ls.o cvodes/cvodes_nls.o cvodes/cvodes_nls_sim.o cvodes/cvodes_nls_stg.o cvodes/cvodes_nls_stg1.o cvodes/cvodes_spils.o sundials/sundials_band.o sundials/sundials_context.o sundials/sundials_dense.o sundials/sundials_direct.o sundials/sundials_futils.o sundials/sundials_iterative.o sundials/sundials_linearsolver.o sundials/sundials_math.o sundials/sundials_matrix.o sundials/sundials_memory.o sundials/sundials_nonlinearsolver.o sundials/sundials_nvector.o sundials/sundials_nvector_senswrapper.o sundials/sundials_profiler.o sundials/sundials_version.o sunmatrix/band/sunmatrix_band.o sunmatrix/dense/sunmatrix_dense.o sunlinsol/band/sunlinsol_band.o sunlinsol/dense/sunlinsol_dense.o sunnonlinsol/newton/sunnonlinsol_newton.o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o idas/idaa.o idas/idaa_io.o idas/idas.o idas/idas_bbdpre.o idas/idas_direct.o idas/idas_ic.o idas/idas_io.o idas/idas_ls.o idas/idas_nls.o idas/idas_nls_sim.o idas/idas_nls_stg.o idas/idas_spils.o sundials/sundials_band.o sundials/sundials_context.o sundials/sundials_dense.o sundials/sundials_direct.o sundials/sundials_futils.o sundials/sundials_iterative.o sundials/sundials_linearsolver.o sundials/sundials_math.o sundials/sundials_matrix.o sundials/sundials_memory.o sundials/sundials_nonlinearsolver.o sundials/sundials_nvector.o sundials/sundials_nvector_senswrapper.o sundials/sundials_profiler.o sundials/sundials_version.o sunmatrix/band/sunmatrix_band.o sunmatrix/dense/sunmatrix_dense.o sunlinsol/band/sunlinsol_band.o sunlinsol/dense/sunlinsol_dense.o sunnonlinsol/newton/sunnonlinsol_newton.o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o kinsol/kinsol.o kinsol/kinsol_bbdpre.o kinsol/kinsol_direct.o kinsol/kinsol_io.o kinsol/kinsol_ls.o kinsol/kinsol_spils.o sundials/sundials_band.o sundials/sundials_context.o sundials/sundials_dense.o sundials/sundials_direct.o sundials/sundials_futils.o sundials/sundials_iterative.o sundials/sundials_linearsolver.o sundials/sundials_math.o sundials/sundials_matrix.o sundials/sundials_memory.o sundials/sundials_nonlinearsolver.o sundials/sundials_nvector.o sundials/sundials_nvector_senswrapper.o sundials/sundials_profiler.o sundials/sundials_version.o sunmatrix/band/sunmatrix_band.o sunmatrix/dense/sunmatrix_dense.o sunlinsol/band/sunlinsol_band.o sunlinsol/dense/sunlinsol_dense.o sunnonlinsol/newton/sunnonlinsol_newton.o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o nvector/serial/nvector_serial.o sundials/sundials_math.o ar: creating ../lib/libStanHeaders.a make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKZvriD/R.INSTALL375c052ccb5b5d/StanHeaders/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-StanHeaders/00new/StanHeaders ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (StanHeaders) * installing *source* package ‘ggplot2’ ... ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘rstan’ * installing *source* package ‘rstan’ ... ** package ‘rstan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWNO5i3/R.INSTALL375e735f412038/rstan/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c Module.cpp -o Module.o In file included from Module.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/rev/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/rev/core/accumulate_adjoints.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from Module.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/model/model_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/rev/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/rev/core/accumulate_adjoints.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from Module.cpp:5: ../inst/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from Module.cpp:5: ../inst/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c chains.cpp -o chains.o In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from chains.cpp:19: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 13 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o In file included from init.cpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from init.cpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c misc.cpp -o misc.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c pointer-tools.cpp -o pointer-tools.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sparse_extractors.cpp -o sparse_extractors.o In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:10: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/err/invalid_argument.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta.hpp:72: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/meta/append_return_type.hpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from sparse_extractors.cpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from sparse_extractors.cpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from sparse_extractors.cpp:2: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 15 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit_base.cpp -o stan_fit_base.o In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit_base.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit_rccp.cpp -o stan_fit_rccp.o In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit_rccp.cpp:1: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c version.cpp -o version.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rstan.so Module.o chains.o init.o misc.o pointer-tools.o sparse_extractors.o stan_fit_base.o stan_fit_rccp.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_REENTRANT -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c stan_fit.cpp -o stan_fit.o In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:5: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stan_fit.cpp:1: In file included from ../inst/include/rstan_next/stan_fit.hpp:5: In file included from ../inst/include/rstan_next/stan_fit_base.hpp:8: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stan_fit.cpp:20: ../inst/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stan_fit.cpp:20: ../inst/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ stan_fit.cpp:1184:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1184 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stan_fit.cpp:42: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::overflow_error, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 18 warnings generated. ar -rs ../inst/lib//libStanServices.a stan_fit.o stan_fit_base.o ar: creating ../inst/lib//libStanServices.a make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWNO5i3/R.INSTALL375e735f412038/rstan/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rstan/00new/rstan/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstan) checking glmmrBase_0.11.2.tar.gz ... Depends: Package: glmmrBase Depends: R (>= 3.5.0), Matrix (>= 1.3-1) Imports: methods, Rcpp (>= 1.0.11), R6, rstan (>= 2.32.1), rstantools (>= 2.3.1.1) LinkingTo: Rcpp (>= 1.0.11), RcppEigen, SparseChol (>= 0.3.2), BH, RcppParallel (>= 5.0.1), rstan (>= 2.32.1), StanHeaders (>= 2.32.0) Timings: user system elapsed glmmrBase 938.086 35.433 974.794 Results: Check status summary: OK Source packages 1 Check results summary: glmmrBase ... OK