stopifnot(require("testthat"), require("glmmTMB")) ## load(system.file("test_data", "models.rda", package="glmmTMB", mustWork=TRUE)) context("sparse X models") test_that("basic fits", { fm2S <- update(fm2,sparseX=c(cond=TRUE)) ## loosened from 1e-6 to 2e-6 for Solaris ... ## loosened further for var -> SD change expect_equal(fixef(fm2), fixef(fm2S), tolerance=1e-5) expect_equal(VarCorr(fm2), VarCorr(fm2S),tolerance=1e-3) expect_equal(dim(getME(fm2,"X")), dim(getME(fm2S,"X"))) expect_equal(predict(fm2), predict(fm2S), tolerance=1e-3) nd <- sleepstudy[1,] expect_equal(predict(fm2, newdata=nd),predict(fm2S, newdata=nd), tolerance=1e-3) }) test_that("back-compatibility", { x <- up2date(readRDS(system.file("test_data","oldfit.rds", package="glmmTMB"))) expect_is(VarCorr(x),"VarCorr.glmmTMB") expect_is(predict(x),"numeric") })