## check that everything works in weird environments stopifnot(require("testthat"), require("glmmTMB")) data(sleepstudy, cbpp, package = "lme4") ## need global env for test_that sleepstudy <<- transform(sleepstudy, DaysFac = factor(Days)) context("basic examples") test_that("basic example #1", { fitFun <- function(dat){ glmmTMB(Reaction ~ Days + (1|Subject), data=dat) } f0 <- glmmTMB(Reaction ~ Days + (1|Subject), data=sleepstudy) f1 <- fitFun(sleepstudy) uncall <- function(x) { x$call <- NULL return(x) } expect_equal(uncall(f0),uncall(f1)) }) test_that("paranoia", { formFun <- function() { return(Reaction ~ Days + (1|Subject)) } fitFun <- function(f,dat){ glmmTMB(f, data=dat) } f0 <- glmmTMB(Reaction ~ Days + (1|Subject), data=sleepstudy) f1 <- fitFun(formFun(),sleepstudy) uncall <- function(x) { x$call <- NULL return(x) } expect_equal(uncall(f0),uncall(f1)) }) test_that("dispformula env", { fitFun2 <- function(dat){ glmmTMB(count ~ 1, data=dat, family="poisson" ) } m0 <- fitFun2(Salamanders) m1 <- glmmTMB(count ~ 1, data= Salamanders, family="poisson") uncall <- function(x) { x$call <- NULL return(x) } expect_equal(uncall(summary(m0)), uncall(summary(m1))) })