stopifnot(require("testthat"), require("glmmTMB"), require("lme4")) if (packageVersion("lme4") != "1.1.29") { ## cat("ON CRAN:", testthat:::on_cran(), "\n") context("bootMer") fun <- function(x) predict(x)[1] test_that("Bernoulli responses", { skip_on_cran() Salamanders$pres <- as.numeric(Salamanders$count>0) m <- glmmTMB(pres ~ mined +(1|site), family=binomial, data=Salamanders) b <- bootMer(m, fun, nsim=2, seed=101) expect_true(var(c(b$t))>0) expect_equal(suppressWarnings(c(confint(b))), c(-1.579923,-1.250725),tolerance=1e-5) }) test_that("binomial responses", { skip_on_cran() m <- glmmTMB(count ~ mined + (1|site), family=poisson, data=Salamanders) ss1 <- simulate(m,nsim=2,seed=101) b <- bootMer(m, fun, nsim=2, seed=101) expect_true(var(c(b$t))>0) expect_equal(suppressWarnings(c(confint(b))), c(-0.7261239,-0.6921794), tolerance=1e-5) }) } ## not on broken lme4 package version