* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/glmmSeq.Rcheck’ * using R Under development (unstable) (2025-09-29 r88883) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-15 (Debian 15.2.0-1) 15.2.0 GNU Fortran (Debian 15.2.0-1) 15.2.0 * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘glmmSeq/DESCRIPTION’ ... OK * this is package ‘glmmSeq’ version ‘0.5.7’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/8s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘glmmSeq’ can be installed ... [9s/9s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/3s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [3s/3s] OK * checking loading without being on the library search path ... [3s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/14s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [7s/7s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [21s/21s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘glmmSeq.rmd’ using rmarkdown | | 0% |======== | 12% eta 3.9 secs |========= | 14% eta 4.6 secs |=========== | 16% eta 4.2 secs |============ | 18% eta 4.4 secs |============= | 20% eta 4.1 secs |=============== | 22% eta 4.3 secs |================ | 24% eta 4.1 secs |================= | 26% eta 3.9 secs |================== | 28% eta 3.7 secs |==================== | 30% eta 3.6 secs |===================== | 32% eta 3.4 secs |====================== | 34% eta 3.2 secs |======================== | 36% eta 3.1 secs |========================= | 38% eta 3.1 secs |========================== | 40% eta 2.8 secs |============================ | 42% eta 2.6 secs |============================= | 44% eta 2.5 secs |============================== | 46% eta 2.5 secs |================================ | 48% eta 2.4 secs |================================= | 50% eta 2.3 secs |================================== | 52% eta 2.3 secs |==================================== | 54% eta 2.2 secs |===================================== | 56% eta 2.1 secs |====================================== | 58% eta 2 secs |======================================== | 60% eta 1.9 secs |========================================= | 62% eta 1.8 secs |========================================== | 64% eta 1.7 secs |============================================ | 66% eta 1.5 secs |============================================= | 68% eta 1.4 secs |============================================== | 70% eta 1.3 secs |================================================ | 72% eta 1.2 secs |================================================= | 74% eta 1.1 secs |================================================== | 76% eta 1.1 secs |=================================================== | 78% eta 1 secs |===================================================== | 80% eta 0.9 secs |====================================================== | 82% eta 0.8 secs |======================================================= | 84% eta 0.7 secs |========================================================= | 86% eta 0.6 secs |========================================================== | 88% eta 0.6 secs |=========================================================== | 90% eta 0.5 secs |============================================================= | 92% eta 0.4 secs |============================================================== | 94% eta 0.3 secs |=============================================================== | 96% eta 0.2 secs |================================================================= | 98% eta 0.1 secs |==================================================================| 100% |==================================================================| 100% (4.54 secs) | | 0% |================================== | 52% eta 0.5 secs |==================================== | 54% eta 0.5 secs |===================================== | 56% eta 0.4 secs |====================================== | 58% eta 0.4 secs |======================================== | 60% eta 0.4 secs |========================================= | 62% eta 0.4 secs |========================================== | 64% eta 0.4 secs |============================================ | 66% eta 0.3 secs |============================================= | 68% eta 0.3 secs |============================================== | 70% eta 0.3 secs |================================================ | 72% eta 0.3 secs |================================================= | 74% eta 0.3 secs |================================================== | 76% eta 0.2 secs |=================================================== | 78% eta 0.2 secs |===================================================== | 80% eta 0.2 secs |====================================================== | 82% eta 0.2 secs |======================================================= | 84% eta 0.2 secs |========================================================= | 86% eta 0.1 secs |========================================================== | 88% eta 0.1 secs |=========================================================== | 90% eta 0.1 secs |============================================================= | 92% eta 0.1 secs |============================================================== | 94% eta 0.1 secs |=============================================================== | 96% eta 0 secs |================================================================= | 98% eta 0 secs |==================================================================| 100% |==================================================================| 100% (0.974 secs) Quitting from glmmSeq.rmd:414-419 [unnamed-chunk-27] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'emmeans' --- Backtrace: ▆ 1. └─base::library(emmeans) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'glmmSeq.rmd' failed with diagnostics: there is no package called 'emmeans' --- failed re-building ‘glmmSeq.rmd’ SUMMARY: processing the following file failed: ‘glmmSeq.rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [0s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR