* using log directory 'd:/RCompile/CRANincoming/R-devel/glioblastomaEHRsData.Rcheck' * using R Under development (unstable) (2025-09-14 r88831 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'glioblastomaEHRsData/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'glioblastomaEHRsData' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Samuele Marelli ' New submission Possibly misspelled words in DESCRIPTION: Cerono (19:56) Chicco (20:24) Davide (20:17) EHRs (3:34, 11:21, 18:47) Melaiu (20:5) Ombretta (19:64) glioblastoma (12:5, 19:5, 21:55) multiforme (22:5) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'glioblastomaEHRsData' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [20s] ERROR Running 'testthat.R' [20s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(glioblastomaEHRsData) > > test_check("glioblastomaEHRsData") Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths processing file: file31b88224b4e5a.Rmd output file: file31b88224b4e5a.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS file31b88224b4e5a.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc31b88620f5c5a.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\rmarkdown-str31b885d122fa6.html" Output created: D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\tables\munich_test_table.html processing file: file31b8867e03b7b.Rmd output file: file31b8867e03b7b.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS file31b8867e03b7b.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc31b88ef87418.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\rmarkdown-str31b8823ac62ae.html" Output created: D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\tables\tainan_test_table.html processing file: file31b8857b93589.Rmd output file: file31b8857b93589.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS file31b8857b93589.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc31b882b226dd7.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\rmarkdown-str31b882a2c10a7.html" Output created: D:\temp\2025_09_15_10_30_17_17530\RtmpchZTJy\tables\utrecht_test_table.html Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image [ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-descriptiveTableMunich2019dataset.R:30:3'): descriptiveTableMunich2019dataset(savePath = 'munich_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-descriptiveTableTainan2020dataset.R:30:3'): descriptiveTableTainan2020dataset(savePath = 'tainan_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-descriptiveTableUtrecht2019dataset.R:30:3'): descriptiveTableUtrecht2019dataset(savePath = 'utrecht_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] Error: Test failures Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE