* using log directory ‘/srv/hornik/tmp/CRAN_pretest/glioblastomaEHRsData.Rcheck’ * using R Under development (unstable) (2025-09-14 r88832) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘glioblastomaEHRsData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘glioblastomaEHRsData’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Samuele Marelli ’ New submission Possibly misspelled words in DESCRIPTION: Cerono (19:56) Chicco (20:24) Davide (20:17) EHRs (3:34, 11:21, 18:47) Melaiu (20:5) Ombretta (19:64) glioblastoma (12:5, 19:5, 21:55) multiforme (22:5) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘glioblastomaEHRsData’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [6s/6s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [15s/15s] ERROR Running ‘testthat.R’ [15s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(glioblastomaEHRsData) > > test_check("glioblastomaEHRsData") Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths processing file: file27d6842217299c.Rmd output file: file27d6842217299c.knit.md /usr/bin/pandoc +RTS -K512m -RTS file27d6842217299c.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/munich_test_table.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/rmarkdown-str27d68450e2b4f0.html [WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead. Output created: /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/munich_test_table.html processing file: file27d684553871e5.Rmd output file: file27d684553871e5.knit.md /usr/bin/pandoc +RTS -K512m -RTS file27d684553871e5.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/tainan_test_table.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/rmarkdown-str27d6845a35bf0a.html [WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead. Output created: /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/tainan_test_table.html processing file: file27d684286871cb.Rmd output file: file27d684286871cb.knit.md /usr/bin/pandoc +RTS -K512m -RTS file27d684286871cb.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/utrecht_test_table.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/rmarkdown-str27d6847cbb1656.html [WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead. Output created: /tmp/RtmpOdxpIO/working_dir/Rtmp1RiGb9/tables/utrecht_test_table.html Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image [ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-descriptiveTableMunich2019dataset.R:30:3'): descriptiveTableMunich2019dataset(savePath = 'munich_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-descriptiveTableTainan2020dataset.R:30:3'): descriptiveTableTainan2020dataset(savePath = 'tainan_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-descriptiveTableUtrecht2019dataset.R:30:3'): descriptiveTableUtrecht2019dataset(savePath = 'utrecht_test_table.pdf') return a table1 object and save a pdf file ── file.exists(path) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 3 | WARN 4 | SKIP 0 | PASS 111 ] Error: Test failures Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE