* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘1.0.7’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:5:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c gkwgetstartvalues.cpp -o gkwgetstartvalues.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c gkwmle.cpp -o gkwmle.o
gkwmle.cpp:17236:9: warning: variable 'trimmed_mean' set but not used [-Wunused-but-set-variable]
 17236 |  double trimmed_mean = 0.0;
       |         ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gkwreg.so RcppExports.o gkwgetstartvalues.o gkwmle.o gkwreg-predict-resid.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwbetareg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.cpp:17:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.cpp:17:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwbetareg_compile_20250501223552/gkwbetareg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_bkwreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.cpp:13:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.cpp:13:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/bkwreg_compile_20250501223624/bkwreg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_ekwreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.cpp:19:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.cpp:19:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/ekwreg_compile_20250501223657/ekwreg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwmletmb  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.cpp:1:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.cpp:1:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwmletmb_compile_20250501223729/gkwmletmb.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.cpp:12:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.cpp:12:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/gkwreg_compile_20250501223800/gkwreg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kkwreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.cpp:16:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.cpp:16:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kkwreg_compile_20250501223832/kkwreg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kwreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.cpp:19:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.cpp:19:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/kwreg_compile_20250501223905/kwreg.o -L/home/hornik/tmp/R/lib -lR
Note: Using Makevars in /home/hornik/.R/Makevars-clang 
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_mcreg  -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.cpp -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.o
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.cpp:17:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseCore:61:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.cpp:17:
In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include/TMB.hpp:96:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/SparseLU:35:
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/tmp/RtmpamgYWB/working_dir/RtmpPbyPhM/RLIBS_70df7b9ad79/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.so /tmp/RtmpamgYWB/working_dir/RtmpJ1OXuW/mcreg_compile_20250501223937/mcreg.o -L/home/hornik/tmp/R/lib -lR
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)