* using log directory ‘/srv/hornik/tmp/CRAN_pretest/gilmour.Rcheck’ * using R Under development (unstable) (2025-06-12 r88305) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘gilmour/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gilmour’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Josef Dolejs ’ New submission Non-FOSS package license (`use_mit_license()`) Possibly misspelled words in DESCRIPTION: Aurélie (19:21) Boisbunon (19:10) Canu (19:30) Dolejs (43:29) Fourdrinier (19:46) Gilmour (3:54, 18:10, 27:7, 57:31, 68:66) Gilmour's (30:64) Gilmour’s (62:42) ISPRS (43:248) Kamil (43:53) Kuca (43:59) Mallows's (17:92, 18:46) Mallows’s (3:30, 57:83) Maresova (43:43) ModelMin (47:97, 48:61, 50:88, 52:13, 53:52, 60:85, 61:113, 65:23) MyResults (75:5) SSEp (24:10) Stemberk (43:7) Stephane (19:36) Strawderman (19:70) bacground (22:24) mtcars (39:43, 39:113, 71:30, 72:11, 74:7) Found the following (possibly) invalid URLs: URL: http://www.mdpi.com/2220-9964/7/3/124 (moved to https://www.mdpi.com/2220-9964/7/3/124) From: inst/doc/gilmour-spec.html Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. The Title field should be in title case. Current version is: ‘the Interpretation of Mallows’s Cp Statistic: Gilmour’ In title case that is: ‘The Interpretation of Mallows’s Cp Statistic: Gilmour’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘gilmour’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: `use_mit_license()` Standardizable: FALSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... WARNING Found the following files with non-ASCII characters: NAMESPACE R/gilmour.R Portable packages must use only ASCII characters in their R code and NAMESPACE directives, except perhaps in comments. Use \uxxxx escapes for other characters. Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII characters in files. * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE examples: no visible global function definition for ‘read.table’ final_model: no visible global function definition for ‘lm’ final_model: no visible global function definition for ‘as.formula’ final_model: no visible global function definition for ‘sigma’ final_model: no visible global function definition for ‘combn’ final_model: no visible global function definition for ‘var’ final_model: no visible global function definition for ‘resid’ final_model: no visible global function definition for ‘read.csv’ submodels: no visible global function definition for ‘lm’ submodels: no visible global function definition for ‘as.formula’ submodels: no visible global function definition for ‘sigma’ submodels: no visible global function definition for ‘combn’ submodels: no visible global function definition for ‘var’ submodels: no visible global function definition for ‘resid’ Undefined global functions or variables: as.formula combn lm read.csv read.table resid sigma var Consider adding importFrom("stats", "as.formula", "lm", "resid", "sigma", "var") importFrom("utils", "combn", "read.csv", "read.table") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'examples.Rd': \examples lines wider than 100 characters: examples= examples() # 9 tables are returned for illustration of the functions submodels() and final_model() # more submodels and calculation takes about 5 seconds, the null hypothesis is not rejected in the first test # Factors affecting the number of Visitors in National Parks in the Czech Republic, Germany and Austria. # Perspective and Suitable Research Area in Public Research—Patent Analysis of the Czech Public Universities Rd file 'final_model.Rd': \examples lines wider than 100 characters: col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) # more submodels and calculation takes about 5 seconds, the null hypothesis is not rejected in the first test col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) # Factors affecting the number of Visitors in National Parks in the Czech Republic, Germany and Austria. d= examples$Parks5p ; rownames(d)= d[,1]; d=d[,-1]; d; MyResults=final_model(d) # using the function final_model() col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) # Perspective and Suitable Research Area in Public Research—Patent Analysis of the Czech Public Universities col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) col=ifelse( ( round(yCp,4)== round(min(yCp),4)| round(yCp,4)== round(FinalCp,4) ), "red", "darkblue") ) Rd file 'submodels.Rd': \examples lines wider than 100 characters: # more submodels and calculation takes about 5 seconds, the null hypothesis is not rejected in the first test # Factors affecting the number of Visitors in National Parks in the Czech Republic, Germany and Austria. d= examples$Parks5p ; rownames(d)= d[,1]; d=d[,-1]; d; MyResults=submodels(d) # using the function submodels() # Perspective and Suitable Research Area in Public Research—Patent Analysis of the Czech Public Universities These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'final_model.Rd': final_model Code: function(d) Docs: function() Argument names in code not in docs: d Codoc mismatches from Rd file 'submodels.Rd': submodels Code: function(d) Docs: function() Argument names in code not in docs: d * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘gilmour-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: examples > ### Title: The function returns nine datasets (the tenth datasets may be > ### "mtcars"). > ### Aliases: examples > > ### ** Examples > > examples= examples() # 9 tables are returned for illustration of the functions submodels() and final_model() Error in examples() : could not find function "examples" Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [3s/3s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character ₚ (U+209A) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character σ (U+03C3) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ̄ (U+0304) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ̄ (U+0304) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character σ (U+03C3) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ̄ (U+0304) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘gilmour-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 4 WARNINGs, 4 NOTEs