testthat::test_that("writing gifti files", { tdir = tempdir() download_gifti_data(tdir) expect_true(have_gifti_test_data(tdir)) ###################################### # Read files ###################################### gii_files = download_gifti_data(tdir) gii_list = lapply(gii_files, readgii) ########################################## # Write files, read again, and check match ########################################## gii_out <- file.path(tdir, "written.gii") for (ii in 1:length(gii_list)) { gii1 <- gii_list[[ii]] # error #5 gii1$data_info$Encoding <- ifelse( gii1$data_info$DataType == "NIFTI_TYPE_INT32", "ASCII", gii1$data_info$Encoding ) writegii(gii1, gii_out) gii2 <- readgii(gii_out) # transformations is an XML pointer, which may differ gii1 <- gii1[names(gii1) != "transformations"] gii2 <- gii2[names(gii2) != "transformations"] expect_equal(gii1, gii2) } ################################################# # Same as above, but write parsed transformations ################################################# gii_out <- file.path(tdir, "written.gii") for (ii in 1:length(gii_list)) { gii1 <- gii_list[[ii]] # error #5 gii1$data_info$Encoding <- ifelse( gii1$data_info$DataType == "NIFTI_TYPE_INT32", "ASCII", gii1$data_info$Encoding ) writegii(gii1, gii_out, use_parsed_transformations = TRUE) gii2 <- readgii(gii_out) # transformations is an XML pointer, which may differ gii1 <- gii1[names(gii1) != "transformations"] gii2 <- gii2[names(gii2) != "transformations"] expect_equal(gii1, gii2) } })