* using log directory 'd:/RCompile/CRANincoming/R-devel/ghmap.Rcheck'
* using R Under development (unstable) (2023-07-14 r84692 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ghmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ghmap' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'yc Sun <yuchensun2436@163.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  CSV (9:530)
  Groupmap (3:8)
  differentially (9:290)
  subfolder (9:213)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ghmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ghmap: no visible global function definition for 'read.csv'
ghmap: no visible global function definition for 'model.matrix'
ghmap: no visible binding for global variable 'tre'
ghmap: no visible binding for global variable 'con'
ghmap: no visible global function definition for 'na.omit'
ghmap: no visible global function definition for 'write.csv'
ghmap: no visible binding for global variable 'P.Value'
ghmap: no visible binding for global variable 'logFC'
ghmap: no visible global function definition for 'colorRampPalette'
Undefined global functions or variables:
  P.Value colorRampPalette con logFC model.matrix na.omit read.csv tre
  write.csv
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("stats", "model.matrix", "na.omit")
  importFrom("utils", "read.csv", "write.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs