* using log directory ‘/srv/hornik/tmp/CRAN/ggtern.Rcheck’ * using R Under development (unstable) (2024-03-23 r86179) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ggtern/DESCRIPTION’ ... OK * this is package ‘ggtern’ version ‘3.5.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers Maintainer: ‘Nicholas Hamilton ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ggtern’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] OK * checking Rd files ... [2s/2s] NOTE checkRd: (-1) theme_complete.Rd:11-13: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:14-16: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:17-19: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:20-22: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:23-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:26-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:29-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:32-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:35-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:38-40: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:41-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:44-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:47-49: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:50-52: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:53-55: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_complete.Rd:56-58: Lost braces in \itemize; meant \describe ? checkRd: (-1) theme_elements.Rd:21: Lost braces 21 | \Sexpr[results=rd,stage=build]{ggtern:::rd_theme()} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link or links in Rd file 'geom_confidence_tern.Rd': ‘[ggplot2:layer_positions]{layer position}’ ‘[ggplot2:layer_stats]{stat}’ ‘[ggplot2:layer_geoms]{geom}’ Missing link or links in Rd file 'geom_crosshair_tern.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_density_tern.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_errorbarX.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_hex_tern.Rd': ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_interpolate_tern.Rd': ‘[ggplot2:layer_positions]{layer position}’ ‘[ggplot2:layer_stats]{stat}’ ‘[ggplot2:layer_geoms]{geom}’ Missing link or links in Rd file 'geom_label_viewport.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_mean_ellipse.Rd': ‘[ggplot2:layer_positions]{layer position}’ ‘[ggplot2:layer_stats]{stat}’ ‘[ggplot2:layer_geoms]{geom}’ Missing link or links in Rd file 'geom_point_swap.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_polygon_closed.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_smooth_tern.Rd': ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_text_viewport.Rd': ‘[ggplot2:layer_stats]{layer stat}’ ‘[ggplot2:layer_positions]{layer position}’ Missing link or links in Rd file 'geom_tri_tern.Rd': ‘[ggplot2:layer_positions]{layer position}’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'ggplot_gtable.Rd': ‘plot’ Documented arguments not in \usage in Rd file 'undocumented.Rd': ‘latex’ ‘ggplot’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [23s/23s] OK * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 2 NOTEs