* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ggtangle.Rcheck’ * using R Under development (unstable) (2024-12-15 r87442) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ggtangle/DESCRIPTION’ ... OK * this is package ‘ggtangle’ version ‘0.0.6’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] NOTE Maintainer: ‘Guangchuang Yu ’ Possibly misspelled words in DESCRIPTION: Yu (6:128) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘ggtangle’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘cli’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s/4s] NOTE as_igraphlayout: no visible global function definition for ‘caller_env’ get_igraph_layout: no visible global function definition for ‘get_fun_from_pkg’ Undefined global functions or variables: caller_env get_fun_from_pkg * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] ERROR Running examples in ‘ggtangle-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: geom_edge > ### Title: layer to draw edges of a network > ### Aliases: geom_edge > > ### ** Examples > > flow_info <- data.frame(from = LETTERS[c(1,2,3,3,4,5,6)], + to = LETTERS[c(5,5,5,6,7,6,7)]) > > dd <- data.frame( + label = LETTERS[1:7], + v1 = abs(rnorm(7)), + v2 = abs(rnorm(7)), + v3 = abs(rnorm(7)) + ) > > g = igraph::graph_from_data_frame(flow_info) > > p <- ggplot(g) + geom_edge() Error in get_fun_from_pkg("igraph", layout) : could not find function "get_fun_from_pkg" Calls: ggplot -> ggplot.igraph -> get_igraph_layout Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [14s/14s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 2 NOTEs