context("stat_poly_eq") library(tibble) old.out.dec <- options(OutDec = ".") on.exit(options(old.out.dec), add = TRUE, after = FALSE) set.seed(4321) # generate artificial data x <- 1:100 y <- (x + x^2 + x^3) + rnorm(length(x), mean = 0, sd = mean(x^3) / 4) my.data <- data.frame(x, y, group = c("A", "B"), y2 = y * c(0.5,2), block = c("a", "a", "b", "b"), wt = sqrt(x)) formula <- y ~ poly(x, 3, raw = TRUE) if (isNamespaceLoaded(name = "package:ggpmisc")) detach(package:ggpmisc, unload = TRUE) if (isNamespaceLoaded(name = "package:ggpp")) detach(package:ggpp, unload = TRUE) if (isNamespaceLoaded(name = "package:ggplot2")) detach(package:ggplot2, unload = TRUE) test_that("poly_eq_noload", { vdiffr::expect_doppelganger("stat_poly_eq_noload", ggplot2::ggplot(my.data, ggplot2::aes(x, y)) + ggplot2::geom_point() + ggpmisc::stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = ggplot2::aes(label = paste(ggplot2::after_stat(eq.label), ggplot2::after_stat(AIC.label), ggplot2::after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_noload_more", ggplot2::ggplot(my.data, ggplot2::aes(x, y)) + ggplot2::geom_point() + ggpmisc::stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = ggplot2::aes(label = paste(ggplot2::after_stat(rr.label), ggplot2::after_stat(rr.confint.label), ggplot2::after_stat(adj.rr.label), ggplot2::after_stat(f.value.label), ggplot2::after_stat(p.value.label), ggplot2::after_stat(n.label), ggplot2::after_stat(method.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_noload_use_label", ggplot2::ggplot(my.data, ggplot2::aes(x, y)) + ggplot2::geom_point() + ggpmisc::stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = ggpmisc::use_label(c("eq", "AIC", "BIC"), sep = "~~")) ) vdiffr::expect_doppelganger("stat_poly_eq_noload_use_label_more", ggplot2::ggplot(my.data, ggplot2::aes(x, y)) + ggplot2::geom_point() + ggpmisc::stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = ggpmisc::use_label(c("R2", "R2.CI", "adj.R2", "F", "P"), sep = "~~")) ) }) library(ggpmisc) # testthat does not "see" the messages and warnings, so these tests play no role # test_that("number_of_rows_lm", { # # message works but is not seen by the test # expect_message( # ggplot(my.data[1, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_silent( # ggplot(my.data[1:2, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_message( # ggplot(my.data[1:2, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2), parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_silent( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_silent( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2), parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_message( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2) + I(x^3), parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_message( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = x ~ y + I(y^2) + I(y^3), parse = TRUE, # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # # }) # # test_that("number_of_rows_rlm", { # # message works but is not seen by the test # expect_message( # ggplot(my.data[1, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_silent( # ggplot(my.data[1:2, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_warning( # ggplot(my.data[1:2, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2), parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # expect_message( # ggplot(my.data[1:2, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2), parse = TRUE, # n.min = 3, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_warning( # ggplot(my.data[3:5, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x, parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_silent( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2), parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_warning( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2) + I(x^3), parse = TRUE, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_message( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = y ~ x + I(x^2) + I(x^3), parse = TRUE, # n.min = 4, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # expect_message( # ggplot(my.data[1:3, ], aes(x, y)) + # geom_point() + # stat_poly_eq(formula = x ~ y + I(y^2) + I(y^3), parse = TRUE, # n.min = 4, # method = "rlm", # mapping = # aes(label = paste(after_stat(eq.label), # after_stat(adj.rr.label), # after_stat(AIC.label), # after_stat(BIC.label), # sep = "~~"))) # ) # # }) test_that("poly_formulas", { vdiffr::expect_doppelganger("stat_poly_eq_formula_1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_1a", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(method.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_x", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_x_Iy", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = I(y) ~ x, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_x_Ix", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ I(x), parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xminus1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x - 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xminus1a", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x -1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xminus1b", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x - 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xplus0", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x + 0, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xplus0a", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x +0, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_xplus0b", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x + 0, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_poly1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ poly(x, 1), parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_poly3", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ poly(x, 3), parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_x1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = x ~ 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_y", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = x ~ y, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_yminus1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = x ~ y - 1, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_yplus0", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = x ~ y + 0, parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_ypoly1", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = x ~ poly(y, 1), parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) old.out.dec <- options(OutDec = ",") vdiffr::expect_doppelganger("stat_poly_eq_formula_poly3_comma", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ poly(x, 3), parse = TRUE, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(rr.confint.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_more_comma", ggplot2::ggplot(my.data, ggplot2::aes(x, y)) + ggplot2::geom_point() + ggpmisc::stat_poly_eq(formula = y ~ x, parse = TRUE, mapping = ggplot2::aes(label = paste(after_stat(rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(method.label), sep = "~~"))) ) options(old.out.dec) }) test_that("poly_methods", { vdiffr::expect_doppelganger("stat_poly_eq_lm_chr", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, method = "lm", mapping = aes(label = paste(after_stat(eq.label), after_stat(rr.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_lm_fun", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, method = lm, mapping = aes(label = paste(after_stat(eq.label), after_stat(rr.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_rlm_chr", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, method = "rlm", mapping = aes(label = paste(after_stat(eq.label), after_stat(rr.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_rlm_fun", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, method = MASS::rlm, mapping = aes(label = paste(after_stat(eq.label), after_stat(rr.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), after_stat(n.label), after_stat(AIC.label), after_stat(BIC.label), sep = "~~"))) ) }) test_that("textual_positions", { vdiffr::expect_doppelganger("stat_poly_eq_0", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE) ) vdiffr::expect_doppelganger("stat_poly_eq_1", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, geom = "text_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_2", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, geom = "label_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_3", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, geom = "text") ) vdiffr::expect_doppelganger("stat_poly_eq_4", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, geom = "label") ) vdiffr::expect_doppelganger("stat_poly_eq_5", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = "right", label.y = "bottom", geom = "text_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_6", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = "right", label.y = "bottom", geom = "label_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_7", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = "right", label.y = "bottom", geom = "text") ) vdiffr::expect_doppelganger("stat_poly_eq_8", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = "right", label.y = "bottom", geom = "label") ) }) test_that("numeric_positions", { vdiffr::expect_doppelganger("stat_poly_eq_n1", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 0, label.y = 0, geom = "text_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_n2", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 0, label.y = 0, geom = "label_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_n3", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 0, label.y = -1e5, geom = "text") ) vdiffr::expect_doppelganger("stat_poly_eq_n4", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 0, label.y = -1e5, geom = "label") ) vdiffr::expect_doppelganger("stat_poly_eq_n5", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 1, label.y = 0.5, geom = "text_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_n6", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 1, label.y = 0.5, geom = "label_npc") ) vdiffr::expect_doppelganger("stat_poly_eq_n7", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 100, label.y = 5e5, geom = "text") ) vdiffr::expect_doppelganger("stat_poly_eq_n8", ggplot(my.data, aes(x, y)) + geom_point() + stat_smooth(method = "lm", formula = formula) + stat_poly_eq(formula = formula, parse = TRUE, label.x = 100, label.y = 5e5, geom = "label") ) }) test_that("rounding_signif", { vdiffr::expect_doppelganger("stat_poly_eq_formula_x_round", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, rr.digits = 3, p.digits = 2, f.digits = 3, coef.digits = 6, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_1_round", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ 1, parse = TRUE, rr.digits = 3, p.digits = 2, f.digits = 2, coef.digits = 4, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) vdiffr::expect_doppelganger("stat_poly_eq_formula_x_round_Inf", ggplot(my.data, aes(x, y)) + geom_point() + stat_poly_eq(formula = y ~ x, parse = TRUE, rr.digits = 3, p.digits = Inf, f.digits = 3, coef.digits = 4, mapping = aes(label = paste(after_stat(eq.label), after_stat(adj.rr.label), after_stat(f.value.label), after_stat(p.value.label), sep = "~~"))) ) })