* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ggpicrust2.Rcheck’
* using R Under development (unstable) (2025-04-02 r88102)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ggpicrust2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ggpicrust2’ version ‘2.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Chen Yang <cafferychen7850@gmail.com>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  al (8:458)
  et (8:455)
  microbiome (8:167)
  pre (8:88)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-11-25 as issues were not corrected
    in time.

  Requires BioC packages no longer available as of BioC 3.20.

Found the following (possibly) invalid URLs:
  URL: https://www.reddit.com/submit?url=https%3A%2F%2Fgithub.com%2Fcafferychen777%2Fggpicrust2&title=Check%20out%20this%20awesome%20package%20on%20GitHub%21
    From: README.md
    Status: 403
    Message: Forbidden
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘lefser’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ggpicrust2’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE