R Under development (unstable) (2026-01-10 r89298 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ggpedigree) > > test_check("ggpedigree") No individuals with more than two parents detected. No duplicate edges detected. No cyclic relationships detected. REPAIR IN EARLY ALPHA tibble [5,251 x 9] (S3: tbl_df/tbl/data.frame) $ personID: num [1:5251] 8 11 13 51 58 59 72 184 200 201 ... $ momID : int [1:5251] NA NA NA NA NA NA NA NA 58 58 ... $ dadID : int [1:5251] NA NA NA NA NA NA NA NA NA NA ... $ sex : chr [1:5251] "F" "F" "F" "F" ... $ famID : num [1:5251] 8 8 8 8 8 8 8 8 8 8 ... $ byear : int [1:5251] NA NA NA NA NA NA NA NA NA NA ... $ dyear : num [1:5251] NA NA NA NA NA NA NA NA NA NA ... $ lrs : int [1:5251] NA NA NA NA NA NA NA NA NA NA ... $ ars_mean: num [1:5251] NA NA NA NA NA NA NA NA NA NA ... REPAIR IN EARLY ALPHA -- Attaching core tidyverse packages ------------------------ tidyverse 2.0.0 -- v dplyr 1.1.4 v readr 2.1.6 v forcats 1.0.1 v stringr 1.6.0 v ggplot2 4.0.1 v tibble 3.3.1 v lubridate 1.9.4 v tidyr 1.3.2 v purrr 1.2.1 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::edition_get() masks testthat::edition_get() x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag() x readr::local_edition() masks testthat::local_edition() i Use the conflicted package () to force all conflicts to become errors The 'plotly' package is required for interactive plots. Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 134 Coordinates calculated. Number of individuals: 141 Found 13 extra appearances in the pedigree. Unique core IDs: Core IDs of extras: 7, 61, 86, 101, 102, 120 Total blue count: 0 Processed 141 individuals in the pedigree. Found 16 self coordinates. Connections calculated. Number of connections: 141 Adding nodes to the plot... Focal fill column: Status column: proband REPAIR IN EARLY ALPHA Pedigree data prepared. Number of individuals: 36 Coordinates calculated. Number of individuals: 36 Connections calculated. Number of connections: 36 Adding nodes to the plot... Focal fill column: sex Status column: Debug mode is ON. Debugging information will be printed. REPAIR IN EARLY ALPHA Pedigree data prepared. Number of individuals: 36 Coordinates calculated. Number of individuals: 36 Connections calculated. Number of connections: 36 Adding nodes to the plot... Focal fill column: sex Status column: Loading required package: Matrix Attaching package: 'Matrix' The following objects are masked from 'package:tidyr': expand, pack, unpack Loading required package: quadprog Warning: kinship2 package is deprecated for R <= 4.5; switch functionality to Pedixplorer from BioConductor Attaching package: 'kinship2' The following object is masked from 'package:ggpedigree': pedigree Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: Debug mode is ON. Debugging information will be printed. Pedigree data prepared. Number of individuals: 3 Coordinates calculated. Number of individuals: 3 Connections calculated. Number of connections: 3 Adding nodes to the plot... Focal fill column: Status column: REPAIR IN EARLY ALPHA REPAIR IN EARLY ALPHA Did not plot the following people: 113 $plist $plist$n [1] 6 12 17 8 $plist$nid [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 5 6 7 8 35 36 0 0 0 0 0 0 0 0 [2,] 1 2 15 17 16 18 19 20 3 4 37 38 0 0 [3,] 9 10 29 30 31 32 33 34 10 11 12 18 14 15 [4,] 21 22 23 24 25 26 27 28 0 0 0 0 0 0 [,15] [,16] [,17] [1,] 0 0 0 [2,] 0 0 0 [3,] 39 40 41 [4,] 0 0 0 $plist$pos [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [1,] 3.750000e+00 4.75 6.50 7.50 11.97418 12.97418 0.00 0.00 0.00000 [2,] -7.228342e-13 1.00 2.00 3.00 4.00000 5.00000 6.00 7.00 10.59136 [3,] 1.000000e-02 1.01 2.01 3.01 4.01000 5.01000 6.01 7.01 8.01000 [4,] 2.156915e-28 1.00 2.00 3.00 10.01000 11.01000 12.01 13.01 0.00000 [,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [1,] 0.00000 0.00000 0.00000 0.00 0.00 0.00 0.00 0.00 [2,] 11.59136 13.35701 14.35701 0.00 0.00 0.00 0.00 0.00 [3,] 9.01000 10.01000 11.01000 12.01 13.01 14.01 15.01 16.01 [4,] 0.00000 0.00000 0.00000 0.00 0.00 0.00 0.00 0.00 $plist$fam [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [2,] 0 0 1 0 1 1 1 3 5 0 0 5 0 0 [3,] 1 0 4 7 7 7 7 7 9 9 9 0 9 0 [4,] 1 1 1 1 11 11 13 13 0 0 0 0 0 0 [,15] [,16] [,17] [1,] 0 0 0 [2,] 0 0 0 [3,] 11 11 11 [4,] 0 0 0 $plist$spouse [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 1 0 1 0 1 0 0 0 0 0 0 0 0 0 [2,] 1 0 0 1 0 0 1 0 1 0 1 0 0 0 [3,] 1 0 0 0 0 0 0 0 0 0 1 0 1 0 [4,] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [,15] [,16] [,17] [1,] 0 0 0 [2,] 0 0 0 [3,] 0 0 0 [4,] 0 0 0 $x [1] -7.228342e-13 1.000000e+00 1.059136e+01 1.159136e+01 3.750000e+00 [6] 4.750000e+00 6.500000e+00 7.500000e+00 1.000000e-02 1.010000e+00 [11] 9.010000e+00 1.001000e+01 NA 1.201000e+01 2.000000e+00 [16] 4.000000e+00 3.000000e+00 5.000000e+00 6.000000e+00 7.000000e+00 [21] 2.156915e-28 1.000000e+00 2.000000e+00 3.000000e+00 1.001000e+01 [26] 1.101000e+01 1.201000e+01 1.301000e+01 2.010000e+00 3.010000e+00 [31] 4.010000e+00 5.010000e+00 6.010000e+00 7.010000e+00 1.197418e+01 [36] 1.297418e+01 1.335701e+01 1.435701e+01 1.401000e+01 1.501000e+01 [41] 1.601000e+01 $y [1] 2 2 2 2 1 1 1 1 3 3 3 3 NA 3 2 2 2 2 2 2 4 4 4 4 4 [26] 4 4 4 3 3 3 3 3 3 1 1 2 2 3 3 3 $boxw [1] 0.5396912 $boxh [1] 0.1502907 $call plot.pedigree(x = ped1) Did not plot the following people: 113 $plist $plist$n [1] 6 12 16 8 $plist$nid [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 1 2 12 13 14 15 0 0 0 0 0 0 0 0 [2,] 3 4 10 11 8 9 22 24 23 25 26 27 0 0 [3,] 5 6 7 18 19 25 21 22 17 16 36 37 38 39 [4,] 32 33 34 35 28 29 30 31 0 0 0 0 0 0 [,15] [,16] [1,] 0 0 [2,] 0 0 [3,] 40 41 [4,] 0 0 $plist$pos [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 2.578624e+00 3.578624 11.073169 12.073169 13.823169 14.823169 0.000000 [2,] 1.099555e+00 2.099555 4.057693 5.057693 7.323169 8.323169 9.323169 [3,] 8.195226e-12 1.000000 2.000000 3.000000 4.000000 5.000000 6.000000 [4,] 3.738796e+00 4.738796 5.738796 6.738796 7.738796 8.738796 9.738796 [,8] [,9] [,10] [,11] [,12] [,13] [,14] [,15] [,16] [1,] 0.00000 0.00000 0.00000 0.00000 0.00000 0.00 0.00 0.00 0.00 [2,] 10.32317 11.32317 12.32317 13.32317 14.32317 0.00 0.00 0.00 0.00 [3,] 7.00000 8.00000 9.00000 10.01000 11.01000 12.01 13.01 14.01 15.01 [4,] 10.73880 0.00000 0.00000 0.00000 0.00000 0.00 0.00 0.00 0.00 $plist$fam [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [2,] 0 1 1 0 0 0 3 0 3 3 3 5 0 0 [3,] 1 1 1 3 3 0 3 0 3 5 8 11 11 11 [4,] 5 5 7 7 9 9 9 9 0 0 0 0 0 0 [,15] [,16] [1,] 0 0 [2,] 0 0 [3,] 11 11 [4,] 0 0 $plist$spouse [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 1 0 1 0 1 0 0 0 0 0 0 0 0 0 [2,] 1 0 1 0 1 0 0 1 0 0 1 0 0 0 [3,] 0 0 0 0 1 0 1 0 1 0 0 0 0 0 [4,] 0 0 0 0 0 0 0 0 0 0 0 0 0 0 [,15] [,16] [1,] 0 0 [2,] 0 0 [3,] 0 0 [4,] 0 0 $x [1] 2.578624e+00 3.578624e+00 1.099555e+00 2.099555e+00 8.195226e-12 [6] 1.000000e+00 2.000000e+00 7.323169e+00 8.323169e+00 4.057693e+00 [11] 5.057693e+00 1.107317e+01 1.207317e+01 1.382317e+01 1.482317e+01 [16] 9.000000e+00 8.000000e+00 3.000000e+00 4.000000e+00 NA [21] 6.000000e+00 9.323169e+00 1.132317e+01 1.032317e+01 5.000000e+00 [26] 1.332317e+01 1.432317e+01 7.738796e+00 8.738796e+00 9.738796e+00 [31] 1.073880e+01 3.738796e+00 4.738796e+00 5.738796e+00 6.738796e+00 [36] 1.001000e+01 1.101000e+01 1.201000e+01 1.301000e+01 1.401000e+01 [41] 1.501000e+01 $y [1] 1 1 2 2 3 3 3 2 2 2 2 1 1 1 1 3 3 3 3 NA 3 2 2 2 3 [26] 2 2 4 4 4 4 4 4 4 4 3 3 3 3 3 3 $boxw [1] 0.5059816 $boxh [1] 0.1502907 $call plot.pedigree(x = ped1reord) Pedigree object with 10 subjects Bit size= 8 Did not plot the following people: 10302 Standardizing column names... c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)c(10101, 10102, 10201, 10202, 10203, 10204, 10205, 10206, 10207, 10301, 10302, 10303, 10304, 10305, 10306, 10307, 10308, 10309, 10310, 10311, 10312, 10313, 10314, 10315, 10316, 10317, 10318, 10319, 10320, 10401, 10402, 10403, 10404, 10405, 10406, 10407, 10408, 10410, 10411, 10412, 10413, 10414, 10416, 10417, 10418, 10419, 10420, 10421, 10422, 10423, 10424, 10425, 10427, 10429, 10430, 10431, 10432)c(0, 0, 0, 2, 2, 0, 2, 2, 0, 5, 0, 5, 5, 0, 5, 0, 6, 0, 6, 0, 6, 0, 6, 9, 9, 0, 0, 9, 9, 13, 13, 13, 13, 16, 16, 16, 16, 18, 18, 18, 19, 18, 19, 20, 19, 20, 21, 19, 20, 21, 20, 21, 21, 29, 29, 29, 29)c(0, 0, 0, 1, 1, 0, 1, 1, 0, 3, 0, 3, 3, 0, 3, 0, 4, 0, 4, 0, 4, 0, 4, 7, 7, 0, 0, 7, 7, 14, 14, 14, 14, 15, 15, 15, 15, 17, 17, 17, 22, 17, 22, 25, 22, 25, 26, 22, 25, 26, 25, 26, 26, 27, 27, 27, 27)c(2, 1, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 1, 2, 2, 1, 2, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 2, 2, 2, 2, 2, 2, 1, 2, 2, 1, 2, 2, 1, 1, 2, 1, 1, 1, 1, 1, 2, 2)c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) Standardizing column names... Standardizing column names... c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)c(10101, 10102, 10201, 10202, 10203, 10204, 10205, 10206, 10207, 10301, 10302, 10303, 10304, 10305, 10306, 10307, 10308, 10309, 10310, 10311, 10312, 10313, 10314, 10315, 10316, 10317, 10318, 10319, 10320, 10401, 10402, 10403, 10404, 10405, 10406, 10407, 10408, 10410, 10411, 10412, 10413, 10414, 10416, 10417, 10418, 10419, 10420, 10421, 10422, 10423, 10424, 10425, 10427, 10429, 10430, 10431, 10432)c(0, 0, 0, 2, 2, 0, 2, 2, 0, 5, 0, 5, 5, 0, 5, 0, 6, 0, 6, 0, 6, 0, 6, 9, 9, 0, 0, 9, 9, 13, 13, 13, 13, 16, 16, 16, 16, 18, 18, 18, 19, 18, 19, 20, 19, 20, 21, 19, 20, 21, 20, 21, 21, 29, 29, 29, 29)c(0, 0, 0, 1, 1, 0, 1, 1, 0, 3, 0, 3, 3, 0, 3, 0, 4, 0, 4, 0, 4, 0, 4, 7, 7, 0, 0, 7, 7, 14, 14, 14, 14, 15, 15, 15, 15, 17, 17, 17, 22, 17, 22, 25, 22, 25, 26, 22, 25, 26, 25, 26, 26, 27, 27, 27, 27)c(2, 1, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 1, 2, 2, 1, 2, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 2, 2, 2, 2, 2, 2, 1, 2, 2, 1, 2, 2, 1, 1, 2, 1, 1, 1, 1, 1, 2, 2)c(0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) Standardizing column names... c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)c(10101, 10102, 10201, 10202, 10203, 10204, 10205, 10206, 10207, 10301, 10302, 10303, 10304, 10305, 10306, 10307, 10308, 10309, 10310, 10311, 10312, 10313, 10314, 10315, 10316, 10317, 10318, 10319, 10320, 10401, 10402, 10403, 10404, 10405, 10406, 10407, 10408, 10410, 10411, 10412, 10413, 10414, 10416, 10417, 10418, 10419, 10420, 10421, 10422, 10423, 10424, 10425, 10427, 10429, 10430, 10431, 10432)c(0, 0, 0, 2, 2, 0, 2, 2, 0, 5, 0, 5, 5, 0, 5, 0, 6, 0, 6, 0, 6, 0, 6, 9, 9, 0, 0, 9, 9, 13, 13, 13, 13, 16, 16, 16, 16, 18, 18, 18, 19, 18, 19, 20, 19, 20, 21, 19, 20, 21, 20, 21, 21, 29, 29, 29, 29)c(0, 0, 0, 1, 1, 0, 1, 1, 0, 3, 0, 3, 3, 0, 3, 0, 4, 0, 4, 0, 4, 0, 4, 7, 7, 0, 0, 7, 7, 14, 14, 14, 14, 15, 15, 15, 15, 17, 17, 17, 22, 17, 22, 25, 22, 25, 26, 22, 25, 26, 25, 26, 26, 27, 27, 27, 27)c(2, 1, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 1, 2, 2, 1, 2, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 2, 1, 1, 2, 1, 1, 2, 2, 2, 2, 2, 2, 1, 2, 2, 1, 2, 2, 1, 1, 2, 1, 1, 1, 1, 1, 2, 2)c(0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) Standardizing column names... Standardizing column names... c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)1:16c(0, 0, 0, 0, 2, 2, 4, 4, 4, 4, 6, 6, 6, 6, 6, 6)c(0, 0, 0, 0, 1, 1, 3, 3, 3, 3, 7, 7, 7, 8, 8, 8)c(2, 1, 2, 1, 1, 1, 2, 2, 1, 1, 2, 1, 2, 1, 2, 1)c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)1:16c(0, 0, 0, 0, 2, 2, 4, 4, 4, 4, 6, 6, 6, 6, 6, 6)c(0, 0, 0, 0, 1, 1, 3, 3, 3, 3, 7, 7, 7, 8, 8, 8)c(2, 1, 2, 1, 1, 1, 2, 2, 1, 1, 2, 1, 2, 1, 2, 1)c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0) [ FAIL 0 | WARN 0 | SKIP 2 | PASS 1002 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-kinship2_pedigrees.R:3:1', 'test-kinship2_pedigrees.R:56:1' [ FAIL 0 | WARN 0 | SKIP 2 | PASS 1002 ] > > proc.time() user system elapsed 74.45 5.96 80.40