downloading reverse dependencies ... downloading bspcov_1.0.3.tar.gz ... ok downloading EcoDiet_2.0.1.tar.gz ... ok downloading missingHE_1.5.1.tar.gz ... ok downloading MixSIAR_3.1.12.tar.gz ... ok downloading oHMMed_1.0.2.tar.gz ... ok downloading PLMIX_2.2.0.tar.gz ... ok downloading rbioacc_1.3.1.tar.gz ... ok downloading afdx_1.1.1.tar.gz ... ok downloading airGR_1.7.6.tar.gz ... ok downloading crmPack_1.0.6.tar.gz ... ok downloading metamisc_0.4.0.tar.gz ... ok downloading runMCMCbtadjust_1.1.2.tar.gz ... ok installing dependencies ‘BCEA’, ‘caRamel’, ‘cvms’, ‘extrafont’, ‘FinCovRegularization’, ‘ggmcmc’, ‘greta’, ‘hdbinseg’, ‘mcmcr’, ‘mistr’, ‘nimbleAPT’, ‘nimbleHMC’, ‘PlackettLuce’, ‘pmr’, ‘POET’, ‘prefmod’, ‘radarchart’, ‘rankdist’, ‘Rmalschains’, ‘StatRank’, ‘tidyquant’ Warning: package ‘greta’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Rttf2pt1’, ‘MCMCvis’, ‘voi’, ‘extras’, ‘nlist’, ‘term’, ‘universals’, ‘groupdata2’, ‘rearrr’, ‘psychotree’ begin installing package ‘Rttf2pt1’ begin installing package ‘MCMCvis’ begin installing package ‘voi’ begin installing package ‘extras’ begin installing package ‘universals’ begin installing package ‘psychotree’ begin installing package ‘rearrr’ begin installing package ‘FinCovRegularization’ begin installing package ‘hdbinseg’ begin installing package ‘POET’ begin installing package ‘tidyquant’ begin installing package ‘mistr’ begin installing package ‘radarchart’ begin installing package ‘pmr’ begin installing package ‘prefmod’ begin installing package ‘rankdist’ begin installing package ‘StatRank’ begin installing package ‘caRamel’ begin installing package ‘Rmalschains’ begin installing package ‘nimbleAPT’ begin installing package ‘nimbleHMC’ begin installing package ‘ggmcmc’ * installing *source* package ‘POET’ ... ** this is package ‘POET’ version ‘2.0’ ** package ‘POET’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (POET) * installing *source* package ‘universals’ ... ** this is package ‘universals’ version ‘0.0.5’ ** package ‘universals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (universals) * installing *source* package ‘FinCovRegularization’ ... ** this is package ‘FinCovRegularization’ version ‘1.1.0’ ** package ‘FinCovRegularization’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FinCovRegularization) * installing *source* package ‘radarchart’ ... ** this is package ‘radarchart’ version ‘0.3.1’ ** package ‘radarchart’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (radarchart) * installing *source* package ‘pmr’ ... ** this is package ‘pmr’ version ‘1.2.5.1’ ** package ‘pmr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmr) * installing *source* package ‘caRamel’ ... ** this is package ‘caRamel’ version ‘1.4’ ** package ‘caRamel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYbdjbc/R.INSTALLa102f35e0d134/caRamel/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c caramel.c -o caramel.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c pareto_and_co.f95 -o pareto_and_co.o pareto_and_co.f95:50:23: 50 | integer :: i, j, k, nleft | 1 Warning: Unused variable ‘j’ declared at (1) [-Wunused-variable] pareto_and_co.f95:50:26: 50 | integer :: i, j, k, nleft | 1 Warning: Unused variable ‘k’ declared at (1) [-Wunused-variable] pareto_and_co.f95:45:55: 45 | real(kind=c_double), dimension(nind, nobj) :: Xrow | 1~~~ Warning: Unused variable ‘xrow’ declared at (1) [-Wunused-variable] gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o caRamel.so caramel.o pareto_and_co.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYbdjbc/R.INSTALLa102f35e0d134/caRamel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-caRamel/00new/caRamel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caRamel) * installing *source* package ‘extras’ ... ** this is package ‘extras’ version ‘0.8.0’ ** package ‘extras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extras) begin installing package ‘term’ * installing *source* package ‘MCMCvis’ ... ** this is package ‘MCMCvis’ version ‘0.16.3’ ** package ‘MCMCvis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MCMCvis) * installing *source* package ‘psychotree’ ... ** this is package ‘psychotree’ version ‘0.16-2’ ** package ‘psychotree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (psychotree) begin installing package ‘PlackettLuce’ * installing *source* package ‘StatRank’ ... ** this is package ‘StatRank’ version ‘0.0.6’ ** package ‘StatRank’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (StatRank) * installing *source* package ‘term’ ... ** this is package ‘term’ version ‘0.3.6’ ** package ‘term’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (term) begin installing package ‘nlist’ * installing *source* package ‘ggmcmc’ ... ** this is package ‘ggmcmc’ version ‘1.5.1.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggmcmc) * installing *source* package ‘Rttf2pt1’ ... ** this is package ‘Rttf2pt1’ version ‘1.3.14’ ** package ‘Rttf2pt1’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu4hD0e/R.INSTALLa0fdf6af6e970/Rttf2pt1/src' echo "make ttf2pt1 in ttf2pt1/ ..." make ttf2pt1 in ttf2pt1/ ... (cd ttf2pt1; make CC="`"/home/hornik/tmp/R-d-gcc-15/bin/R" CMD config CC`" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " ttf2pt1) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpu4hD0e/R.INSTALLa0fdf6af6e970/Rttf2pt1/src/ttf2pt1' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf2pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runt1asm.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ft.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitmap.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o ttf2pt1 ttf2pt1.o pt1.o runt1asm.o ttf.o ft.o bdf.o bitmap.o -lm make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu4hD0e/R.INSTALLa0fdf6af6e970/Rttf2pt1/src/ttf2pt1' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu4hD0e/R.INSTALLa0fdf6af6e970/Rttf2pt1/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1 [1] "" Installing ttf2pt1/ttf2pt1 to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1/exec ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rttf2pt1) begin installing package ‘extrafont’ * installing *source* package ‘nimbleAPT’ ... ** this is package ‘nimbleAPT’ version ‘1.0.7’ ** package ‘nimbleAPT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nimbleAPT) * installing *source* package ‘rearrr’ ... ** this is package ‘rearrr’ version ‘0.3.5’ ** package ‘rearrr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rearrr) begin installing package ‘groupdata2’ * installing *source* package ‘prefmod’ ... ** this is package ‘prefmod’ version ‘0.8-37’ ** package ‘prefmod’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXnisFC/R.INSTALLa1027b8a0c63/prefmod/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c prefmod.f95 -o prefmod.o prefmod.f95:11:2: 11 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] prefmod.f95:34:2: 34 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] prefmod.f95:86:2: 86 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o prefmod.so init.o prefmod.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXnisFC/R.INSTALLa1027b8a0c63/prefmod/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-prefmod/00new/prefmod/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prefmod) * installing *source* package ‘extrafont’ ... ** this is package ‘extrafont’ version ‘0.20’ ** package ‘extrafont’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extrafont) * installing *source* package ‘tidyquant’ ... ** this is package ‘tidyquant’ version ‘1.0.11’ ** package ‘tidyquant’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyquant) * installing *source* package ‘nlist’ ... ** this is package ‘nlist’ version ‘0.4.0’ ** package ‘nlist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlist) begin installing package ‘mcmcr’ * installing *source* package ‘voi’ ... ** this is package ‘voi’ version ‘1.0.3’ ** package ‘voi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (voi) begin installing package ‘BCEA’ * installing *source* package ‘mistr’ ... ** this is package ‘mistr’ version ‘0.0.6’ ** package ‘mistr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mistr) * installing *source* package ‘nimbleHMC’ ... ** this is package ‘nimbleHMC’ version ‘0.2.3’ ** package ‘nimbleHMC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nimbleHMC) * installing *source* package ‘rankdist’ ... ** this is package ‘rankdist’ version ‘1.1.4’ ** package ‘rankdist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDCDVVu/R.INSTALLa1028795acc64/rankdist/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rankdist.so RcppExports.o utils.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDCDVVu/R.INSTALLa1028795acc64/rankdist/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rankdist/00new/rankdist/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rankdist) * installing *source* package ‘hdbinseg’ ... ** this is package ‘hdbinseg’ version ‘1.0.3’ ** package ‘hdbinseg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdMdVhQ/R.INSTALLa10134213fc19/hdbinseg/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o hdbinseg.so RcppExports.o util.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdMdVhQ/R.INSTALLa10134213fc19/hdbinseg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hdbinseg/00new/hdbinseg/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdbinseg) * installing *source* package ‘mcmcr’ ... ** this is package ‘mcmcr’ version ‘0.6.2’ ** package ‘mcmcr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcmcr) * installing *source* package ‘groupdata2’ ... ** this is package ‘groupdata2’ version ‘2.0.5’ ** package ‘groupdata2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'floor' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (groupdata2) begin installing package ‘cvms’ * installing *source* package ‘PlackettLuce’ ... ** this is package ‘PlackettLuce’ version ‘0.4.4’ ** package ‘PlackettLuce’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PlackettLuce) * installing *source* package ‘cvms’ ... ** this is package ‘cvms’ version ‘1.8.1’ ** package ‘cvms’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cvms) * installing *source* package ‘BCEA’ ... ** this is package ‘BCEA’ version ‘2.4.81’ ** package ‘BCEA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BCEA) * installing *source* package ‘Rmalschains’ ... ** this is package ‘Rmalschains’ version ‘0.2-10’ ** package ‘Rmalschains’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptAMkKO/R.INSTALLa10334a357580/Rmalschains/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConfigFile.cc -o ConfigFile.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RmalschainsWrapper.cpp -o RmalschainsWrapper.o In file included from RmalschainsWrapper.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R-d-gcc-15/include/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion] 85 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:190:17: note: in expansion of macro ‘warning’ 190 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:133, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RmalschainsWrapper.cpp:6: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:191:19: note: recursive call 191 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX 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-I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nm_misc.cpp -o nm_misc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c orandom.cc -o orandom.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c origcmaes.cc -o origcmaes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationchc.cc -o populationchc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationjde.cc -o populationjde.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationjdebin.cc -o populationjdebin.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationjdemc.cc -o populationjdemc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationjderand.cc -o populationjderand.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationpso.cc -o populationpso.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c populationreal.cc -o populationreal.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c problem.cc -o problem.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pso.cc -o pso.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cc -o random.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c reducepopulation.cc -o reducepopulation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c replace.cc -o replace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c restart.cc -o restart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c running.cc -o running.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sade.cc -o sade.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sadeaf.cc -o sadeaf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c select.cc -o select.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c selectlsimp.cc -o selectlsimp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c signal.cc -o signal.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplex.cc -o simplex.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solis.cc -o solis.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solisn.cc -o solisn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solisn2.cc -o solisn2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sort.cpp -o sort.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c srandom.cc -o srandom.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssga.cc -o ssga.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c statistics.cc -o statistics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c submat.cpp -o submat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c svd.cpp -o svd.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rmalschains.so ConfigFile.o RmalschainsWrapper.o Rmalschains_init.o bandmat.o chc.o cholesky.o cmaes.o cmaesb.o cmaeshan.o config.o cross.o de.o debug.o distance.o domain.o ea.o evalue.o fft.o get_util.o hholder.o hybrid.o hybrid2ph.o iea.o individual.o initind.o jacobi.o jade.o jdebin.o jdelsgo.o jdemc.o jderand.o localsearch.o lsparammem.o malschains.o mts.o mts1.o mts2.o mtsi.o mutation.o myexcept.o newfft.o newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmat9.o newmatex.o newmatnl.o newmatrm.o newutil.o nm_misc.o orandom.o origcmaes.o populationchc.o populationjde.o populationjdebin.o populationjdemc.o populationjderand.o populationpso.o populationreal.o problem.o pso.o random.o reducepopulation.o replace.o restart.o running.o sade.o sadeaf.o select.o selectlsimp.o signal.o simplex.o solis.o solisn.o solisn2.o sort.o srandom.o ssga.o statistics.o submat.o svd.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptAMkKO/R.INSTALLa10334a357580/Rmalschains/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rmalschains/00new/Rmalschains/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rmalschains) checking ggmcmc_1.5.1.2.tar.gz ... checking bspcov_1.0.3.tar.gz ... checking EcoDiet_2.0.1.tar.gz ... checking missingHE_1.5.1.tar.gz ... checking MixSIAR_3.1.12.tar.gz ... checking oHMMed_1.0.2.tar.gz ... checking PLMIX_2.2.0.tar.gz ... checking rbioacc_1.3.1.tar.gz ... checking airGR_1.7.6.tar.gz ... checking afdx_1.1.1.tar.gz ... checking crmPack_1.0.6.tar.gz ... checking metamisc_0.4.0.tar.gz ... checking runMCMCbtadjust_1.1.2.tar.gz ... Depends: Package: ggmcmc Depends: R (>= 3.5), dplyr (>= 1.0.0), tidyr (>= 1.1.0), ggplot2 Imports: GGally (>= 1.1.0), MASS Timings: user system elapsed ggmcmc 110.057 7.151 119.673 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 10 Check results summary: ggmcmc ... OK rdepends_afdx ... NOTE * checking package subdirectories ... NOTE rdepends_airGR ... OK rdepends_bspcov ... OK rdepends_crmPack ... OK rdepends_EcoDiet ... OK rdepends_metamisc ... OK rdepends_missingHE ... OK rdepends_MixSIAR ... OK rdepends_oHMMed ... OK rdepends_PLMIX ... OK rdepends_rbioacc ... OK rdepends_runMCMCbtadjust ... NOTE * checking dependencies in R code ... NOTE Check results changes: Package: MixSIAR Check: CRAN incoming feasibility Old result: NOTE Package: runMCMCbtadjust Check: DESCRIPTION meta-information Old result: NOTE New result: OK