downloading reverse dependencies ... downloading changepoints_1.1.0.tar.gz ... ok downloading CompMix_0.1.0.tar.gz ... ok downloading ecpc_3.1.1.tar.gz ... ok downloading FIT_0.0.6.tar.gz ... ok downloading higlasso_0.9.0.tar.gz ... ok downloading ICBioMark_0.1.4.tar.gz ... ok downloading MLGL_1.0.0.tar.gz ... ok downloading PhylogeneticEM_1.8.0.tar.gz ... ok downloading PIE_1.0.0.tar.gz ... ok downloading PRSPGx_0.3.0.tar.gz ... ok downloading dfr_0.1.5.tar.gz ... ok downloading fdaSP_1.1.1.tar.gz ... ok downloading sgs_0.3.7.tar.gz ... ok downloading sharp_1.4.7.tar.gz ... ok downloading sparsegl_1.1.1.tar.gz ... ok downloading tidyfit_0.7.4.tar.gz ... ok installing dependencies ‘bestglm’, ‘bigsnpr’, ‘bigsparser’, ‘bkmr’, ‘BMS’, ‘BoomSpikeSlab’, ‘fake’, ‘gaselect’, ‘gcdnet’, ‘gets’, ‘gglasso’, ‘grpSLOPE’, ‘gWQS’, ‘hfr’, ‘hierNet’, ‘higlasso’, ‘JOPS’, ‘LINselect’, ‘monomvn’, ‘mRMRe’, ‘MSwM’, ‘multiridge’, ‘propagate’, ‘qgcomp’, ‘rCOSA’, ‘RCy3’, ‘Rlab’, ‘SGL’, ‘sgPLS’, ‘sgs’, ‘shrinkTVP’, ‘SLOPE’, ‘sparcl’, ‘TreeSim’ Warning: package ‘rCOSA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘pbdZMQ’, ‘bigreadr’, ‘bigutilsr’, ‘runonce’, ‘IRkernel’ begin installing package ‘pbdZMQ’ begin installing package ‘bigreadr’ begin installing package ‘bigutilsr’ begin installing package ‘runonce’ begin installing package ‘hierNet’ begin installing package ‘qgcomp’ begin installing package ‘bkmr’ begin installing package ‘gWQS’ begin installing package ‘multiridge’ begin installing package ‘JOPS’ begin installing package ‘gcdnet’ begin installing package ‘LINselect’ begin installing package ‘TreeSim’ begin installing package ‘SGL’ begin installing package ‘bigsparser’ begin installing package ‘propagate’ begin installing package ‘SLOPE’ begin installing package ‘Rlab’ begin installing package ‘grpSLOPE’ begin installing package ‘fake’ begin installing package ‘sgPLS’ begin installing package ‘sparcl’ begin installing package ‘bestglm’ begin installing package ‘BMS’ begin installing package ‘BoomSpikeSlab’ begin installing package ‘gaselect’ begin installing package ‘gets’ begin installing package ‘hfr’ * installing *source* package ‘runonce’ ... ** this is package ‘runonce’ version ‘0.2.3’ ** package ‘runonce’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (runonce) begin installing package ‘monomvn’ * installing *source* package ‘sparcl’ ... ** this is package ‘sparcl’ version ‘1.0.4’ ** package ‘sparcl’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNJxlSX/R.INSTALL7a7515acd8656/sparcl/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c distfun.f -o distfun.o distfun.f:13:5: 13 | 23005 continue | 1 Warning: Label 23005 at (1) defined but not used [-Wunused-label] distfun.f:15:5: 15 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] distfun.f:17:5: 17 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c multfun.f -o multfun.o multfun.f:13:5: 13 | 23005 continue | 1 Warning: Label 23005 at (1) defined but not used [-Wunused-label] multfun.f:15:5: 15 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] multfun.f:17:5: 17 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sparcl.so distfun.o multfun.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNJxlSX/R.INSTALL7a7515acd8656/sparcl/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparcl/00new/sparcl/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparcl) begin installing package ‘mRMRe’ * installing *source* package ‘fake’ ... ** this is package ‘fake’ version ‘1.4.0’ ** package ‘fake’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fake) begin installing package ‘MSwM’ * installing *source* package ‘LINselect’ ... ** this is package ‘LINselect’ version ‘1.1.5’ ** package ‘LINselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LINselect) begin installing package ‘shrinkTVP’ * installing *source* package ‘Rlab’ ... ** this is package ‘Rlab’ version ‘4.0’ ** package ‘Rlab’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rlab) begin installing package ‘gglasso’ * installing *source* package ‘hierNet’ ... ** this is package ‘hierNet’ version ‘1.9’ ** package ‘hierNet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV6SaBh/R.INSTALL7a6f611944769/hierNet/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hierNet.c -o hierNet.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hierNet_init.c -o hierNet_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o hierNet.so hierNet.o hierNet_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV6SaBh/R.INSTALL7a6f611944769/hierNet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hierNet/00new/hierNet/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hierNet) * installing *source* package ‘SGL’ ... ** this is package ‘SGL’ version ‘1.3’ ** package ‘SGL’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAIAPUE/R.INSTALL7a736cb48c18/SGL/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Coxfit.cpp -o Coxfit.o Coxfit.cpp: In function ‘void VCalc(int*, int*, int*, int*, int*, double*, double*)’: Coxfit.cpp:16:10: warning: unused variable ‘w’ [-Wunused-variable] 16 | double w; | ^ Coxfit.cpp:17:10: warning: unused variable ‘r’ [-Wunused-variable] 17 | double r; | ^ Coxfit.cpp: In function ‘void gradCalc(int*, int*, int*, int*, int*, int*, int*, double*, double*, double*)’: Coxfit.cpp:56:10: warning: unused variable ‘r’ [-Wunused-variable] 56 | double r; | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SGL.so Coxfit.o registerDynamicSymbol.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAIAPUE/R.INSTALL7a736cb48c18/SGL/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SGL/00new/SGL/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGL) * installing *source* package ‘hfr’ ... ** this is package ‘hfr’ version ‘0.7.1’ ** package ‘hfr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hfr) * installing *source* package ‘pbdZMQ’ ... ** this is package ‘pbdZMQ’ version ‘0.3-14’ ** package ‘pbdZMQ’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.25... yes checking for zmq... yes checking for zmq_4_1_6... checking for zmq... yes ****************** Results of pbdZMQ package configure ***************** >> GET_PKG_CONFIG = yes >> GET_SYSTEM_ZMQ = yes >> GET_SYSTEM_ZMQ_430 = yes >> PKG_CONFIG = /usr/bin/pkg-config >> SYSTEM_ZMQ_INCLUDEDIR = /usr/include >> SYSTEM_ZMQ_LIBDIR = /usr/lib/x86_64-linux-gnu >> ENABLE_INTERNAL_ZMQ = no >> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include >> INTERNAL_ZMQ_LIBDIR = ./ >> EXTERNAL_ZMQ_INCLUDE = >> EXTERNAL_ZMQ_LDFLAGS = >> ZMQ_INCLUDE = -I/usr/include >> ZMQ_LDFLAGS = -L/usr/lib/x86_64-linux-gnu -lzmq >> EXT_LIBS = >> ZMQ_POLLER = select ************************************************************************ configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq config.status: creating R/zzz.r ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUonzgx/R.INSTALL7a6e76cad064f/pbdZMQ/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_context.c -o R_zmq_context.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_socket.c -o R_zmq_socket.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_sendrecv.c -o R_zmq_sendrecv.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_utility.c -o R_zmq_utility.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_message.c -o R_zmq_message.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_transfer.c -o R_zmq_transfer.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shellexec_wcc.c -o shellexec_wcc.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_poll.c -o R_zmq_poll.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c R_cxx_dummy.cc -o R_cxx_dummy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pbdZMQ.so R_zmq_context.o R_zmq_socket.o R_zmq_sendrecv.o R_zmq_utility.o R_zmq_message.o R_zmq_transfer.o shellexec_wcc.o R_zmq_poll.o R_cxx_dummy.o zzz.o -L/usr/lib/x86_64-linux-gnu -lzmq -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUonzgx/R.INSTALL7a6e76cad064f/pbdZMQ/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdZMQ/00new/pbdZMQ ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdZMQ) begin installing package ‘IRkernel’ * installing *source* package ‘BMS’ ... ** this is package ‘BMS’ version ‘0.3.5’ ** package ‘BMS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BMS) * installing *source* package ‘bestglm’ ... ** this is package ‘bestglm’ version ‘0.37.3’ ** package ‘bestglm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bestglm) * installing *source* package ‘bkmr’ ... ** this is package ‘bkmr’ version ‘0.2.2’ ** package ‘bkmr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bkmr) * installing *source* package ‘multiridge’ ... ** this is package ‘multiridge’ version ‘1.11’ ** package ‘multiridge’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiridge) * installing *source* package ‘grpSLOPE’ ... ** this is package ‘grpSLOPE’ version ‘0.3.3’ ** package ‘grpSLOPE’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3G3NZN/R.INSTALL7a7454e69e15b/grpSLOPE/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c proxSortedL1.c -o proxSortedL1.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prox_sorted_L1.cpp -o prox_sorted_L1.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o grpSLOPE.so RcppExports.o proxSortedL1.o prox_sorted_L1.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3G3NZN/R.INSTALL7a7454e69e15b/grpSLOPE/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-grpSLOPE/00new/grpSLOPE/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grpSLOPE) * installing *source* package ‘gcdnet’ ... ** this is package ‘gcdnet’ version ‘1.0.6’ ** package ‘gcdnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpugRpPj/R.INSTALL7a7222a2f7bf6/gcdnet/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.f90 -o auxiliary.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c erlassoNET.f90 -o erlassoNET.o erlassoNET.f90:264:24: 264 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] erlassoNET.f90:217:24: 217 | DOUBLE PRECISION :: al | ^ note: ‘al’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hsvmlassoNET.f90 -o hsvmlassoNET.o hsvmlassoNET.f90:262:24: 262 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] hsvmlassoNET.f90:216:24: 216 | DOUBLE PRECISION :: al | ^ note: ‘al’ was declared here gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c loglassoNET.f90 -o loglassoNET.o loglassoNET.f90:257:24: 257 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] loglassoNET.f90:213:24: 213 | DOUBLE PRECISION :: al | ^ note: ‘al’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c lslassoNET.f90 -o lslassoNET.o lslassoNET.f90:256:24: 256 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] lslassoNET.f90:212:24: 212 | DOUBLE PRECISION :: al | ^ note: ‘al’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c sqsvmlassoNET.f90 -o sqsvmlassoNET.o sqsvmlassoNET.f90:258:24: 258 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] sqsvmlassoNET.f90:213:24: 213 | DOUBLE PRECISION :: al | ^ note: ‘al’ was declared here gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gcdnet.so auxiliary.o erlassoNET.o hsvmlassoNET.o init.o loglassoNET.o lslassoNET.o sqsvmlassoNET.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpugRpPj/R.INSTALL7a7222a2f7bf6/gcdnet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gcdnet/00new/gcdnet/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gcdnet) * installing *source* package ‘IRkernel’ ... ** this is package ‘IRkernel’ version ‘1.3.2’ ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘RCy3’ * installing *source* package ‘bigreadr’ ... ** this is package ‘bigreadr’ version ‘0.2.5’ ** package ‘bigreadr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxYIjgM/R.INSTALL7a6ee2f202ddc/bigreadr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nlines-split.cpp -o nlines-split.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigreadr.so RcppExports.o nlines-split.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxYIjgM/R.INSTALL7a6ee2f202ddc/bigreadr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigreadr/00new/bigreadr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigreadr) * installing *source* package ‘MSwM’ ... ** this is package ‘MSwM’ version ‘1.5’ ** package ‘MSwM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MSwM) * installing *source* package ‘TreeSim’ ... ** this is package ‘TreeSim’ version ‘2.4’ ** package ‘TreeSim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TreeSim) * installing *source* package ‘gets’ ... ** this is package ‘gets’ version ‘0.38’ ** package ‘gets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gets) * installing *source* package ‘sgPLS’ ... ** this is package ‘sgPLS’ version ‘1.8’ ** package ‘sgPLS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sgPLS) * installing *source* package ‘monomvn’ ... ** this is package ‘monomvn’ version ‘1.9-21’ ** package ‘monomvn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ2OyEq/R.INSTALL7ae0a208960a8/monomvn/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -c blasso.cc -o blasso.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -c bmonomvn.cc -o bmonomvn.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hshoe.c -o hshoe.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linalg.c -o linalg.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c monomvn_init.c -o monomvn_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nu.c -o nu.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rgig.c -o rgig.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.QP.f -o solve.QP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -pedantic -mtune=native -c ustructs.cc -o ustructs.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c util.f -o util.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o monomvn.so blasso.o bmonomvn.o hshoe.o linalg.o matrix.o monomvn_init.o nu.o rgig.o rhelp.o solve.QP.o ustructs.o util.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ2OyEq/R.INSTALL7ae0a208960a8/monomvn/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-monomvn/00new/monomvn/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monomvn) * installing *source* package ‘gglasso’ ... ** this is package ‘gglasso’ version ‘1.6’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGL1B0F/R.INSTALL7b15821563092/gglasso/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hsvm_f.f90 -o hsvm_f.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c log_f.f90 -o log_f.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c ls_f.f90 -o ls_f.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c sqsvm_f.f90 -o sqsvm_f.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c wls_f.f90 -o wls_f.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gglasso.so hsvm_f.o log_f.o ls_f.o registerDynamicSymbol.o sqsvm_f.o wls_f.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGL1B0F/R.INSTALL7b15821563092/gglasso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gglasso/00new/gglasso/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gglasso) begin installing package ‘higlasso’ * installing *source* package ‘mRMRe’ ... ** this is package ‘mRMRe’ version ‘2.1.2.2’ ** package ‘mRMRe’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9w4G8n/R.INSTALL7af97d2d37a5/mRMRe/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Data.cpp -o Data.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o Filter.cpp: In member function ‘const void Filter::placeElements(unsigned int, unsigned int, unsigned int)’: Filter.cpp:198:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 198 | for (int j = 0; j < mFixedFeatureCount; ++j) | ~~^~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Math.cpp -o Math.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matrix.cpp -o Matrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MutualInformationMatrix.cpp -o MutualInformationMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o exports.cpp: In function ‘SEXPREC* export_concordance_index(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:55:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 55 | for (unsigned int i = 0; i < INTEGER(sampleStratumCount)[0]; ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:80:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 80 | for (unsigned int i = 0; i < LENGTH(childrenCountPerLevel); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:92:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 92 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:105:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 105 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:153:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 153 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:159:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 159 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:168:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 168 | for (unsigned int j = 0; j < LENGTH(targetFeatureIndices); ++j) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mRMRe.so Data.o Filter.o Math.o Matrix.o MutualInformationMatrix.o exports.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9w4G8n/R.INSTALL7af97d2d37a5/mRMRe/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mRMRe/00new/mRMRe/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mRMRe) * installing *source* package ‘propagate’ ... ** this is package ‘propagate’ version ‘1.0-6’ ** package ‘propagate’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3BRk92/R.INSTALL7a7385584e651/propagate/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CcolVarsC.cpp -o CcolVarsC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CrowVarsC.cpp -o CrowVarsC.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o propagate.so CcolVarsC.o CrowVarsC.o registerDynamicSymbol.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3BRk92/R.INSTALL7a7385584e651/propagate/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-propagate/00new/propagate/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (propagate) * installing *source* package ‘gWQS’ ... ** this is package ‘gWQS’ version ‘3.0.5’ ** package ‘gWQS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gWQS) * installing *source* package ‘qgcomp’ ... ** this is package ‘qgcomp’ version ‘2.18.4’ ** package ‘qgcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qgcomp) * installing *source* package ‘JOPS’ ... ** this is package ‘JOPS’ version ‘0.2.0’ ** package ‘JOPS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JOPS) * installing *source* package ‘bigutilsr’ ... ** this is package ‘bigutilsr’ version ‘0.3.4’ ** package ‘bigutilsr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxj2bKC/R.INSTALL7a7081f72397f/bigutilsr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ogk.cpp -o ogk.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rollmean.cpp -o rollmean.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rowSumsSq.cpp -o rowSumsSq.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigutilsr.so RcppExports.o ogk.o rollmean.o rowSumsSq.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxj2bKC/R.INSTALL7a7081f72397f/bigutilsr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigutilsr/00new/bigutilsr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigutilsr) * installing *source* package ‘RCy3’ ... ** this is package ‘RCy3’ version ‘2.28.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCy3) * installing *source* package ‘higlasso’ ... ** this is package ‘higlasso’ version ‘0.9.0’ ** package ‘higlasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2gqAs1/R.INSTALL7b5b5694e3614/higlasso/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c higlasso.cpp -o higlasso.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o higlasso.so RcppExports.o higlasso.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2gqAs1/R.INSTALL7b5b5694e3614/higlasso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-higlasso/00new/higlasso/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (higlasso) * installing *source* package ‘BoomSpikeSlab’ ... ** this is package ‘BoomSpikeSlab’ version ‘1.2.6’ ** package ‘BoomSpikeSlab’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppZ54a4/R.INSTALL7a75770f87800/BoomSpikeSlab/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c boom_spike_slab_init.cc -o boom_spike_slab_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22, from logit_spike_slab_wrapper.cc:17: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from logit_spike_slab_wrapper.cc:14: utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BinomialLogitCompositeSpikeSlabSampler]’: logit_spike_slab_wrapper.cc:95:46: required from here 95 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 96 | BOOM::ToBoomVector(r_beta0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 | prior.prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 | model, | ~~~~~~ 99 | sampler); | ~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mlm_spike_slab_wrapper.cc -o mlm_spike_slab_wrapper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/MLVS.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.hpp:24, from mlm_spike_slab_wrapper.cc:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nested_regression_wrapper.cc -o nested_regression_wrapper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nnet_wrapper.cc -o nnet_wrapper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Nnet/GaussianFeedForwardNeuralNetwork.hpp:21, from nnet_wrapper.cc:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Nnet/Nnet.hpp: In function ‘void BOOM::Nnet::to_binary(const BOOM::Vector&, std::vector&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Nnet/Nnet.hpp:40:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | for (int i = 0; i < numeric.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22, from nnet_wrapper.cc:11: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c poisson_spike_slab_wrapper.cc -o poisson_spike_slab_wrapper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp:30, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp:24, from poisson_spike_slab_wrapper.cc:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from poisson_spike_slab_wrapper.cc:16: utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::PoissonRegressionSpikeSlabSampler]’: poisson_spike_slab_wrapper.cc:55:44: required from here 55 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | ToBoomVector(r_initial_beta), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | prior_spec.spike()->prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | model, | ~~~~~~ 59 | sampler); | ~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c probit_spike_slab_wrapper.cc -o probit_spike_slab_wrapper.o In file included from probit_spike_slab_wrapper.cc:14: utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BinomialProbitCompositeSpikeSlabSampler]’: probit_spike_slab_wrapper.cc:80:46: required from here 80 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 81 | BOOM::ToBoomVector(r_beta0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 | prior.prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 | model, | ~~~~~~ 84 | sampler); | ~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c quantile_spike_wrapper.cc -o quantile_spike_wrapper.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/Glm/PosteriorSamplers/QuantileRegressionPosteriorSampler.hpp:28, from quantile_spike_wrapper.cc:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < threads_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 218 | for (int i = 0; i < workers_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from quantile_spike_wrapper.cc:13: utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::QuantileRegressionSpikeSlabSampler]’: quantile_spike_wrapper.cc:50:44: required from here 50 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 51 | ToBoomVector(r_initial_beta), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 | prior_spec.spike()->prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 | model, | ~~~~~~ 54 | sampler); | ~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c shrinkage_regression_wrapper.cc -o shrinkage_regression_wrapper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spike_slab_wrapper.cc -o spike_slab_wrapper.o In file included from spike_slab_wrapper.cc:23: utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::BregVsSampler]’: spike_slab_wrapper.cc:113:48: required from here 113 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 114 | model->Beta(), | ~~~~~~~~~~~~~~ 115 | prior.spike()->prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 | model, | ~~~~~~ 117 | ssvs_sampler); | ~~~~~~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::AdaptiveSpikeSlabRegressionSampler]’: spike_slab_wrapper.cc:135:48: required from here 135 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 136 | model->Beta(), | ~~~~~~~~~~~~~~ 137 | prior.spike()->prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 | model, | ~~~~~~ 139 | ssvs_sampler); | ~~~~~~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr, BOOM::Ptr) [with SAMPLER = BOOM::SpikeSlabDaRegressionSampler]’: spike_slab_wrapper.cc:157:46: required from here 157 | BOOM::spikeslab::InitializeCoefficients( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 158 | model->Beta(), | ~~~~~~~~~~~~~~ 159 | prior.spike()->prior_inclusion_probabilities(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | model, | ~~~~~~ 161 | oda_sampler); | ~~~~~~~~~~~~ utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for (int i = 0; i < initial_beta.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I`/home/hornik/tmp/R/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c splines.cc -o splines.o splines.cc: In function ‘SEXPREC* boom_spike_slab_Bspline_basis(SEXP, SEXP)’: splines.cc:38:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 38 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ splines.cc: In function ‘SEXPREC* boom_spike_slab_Mspline_basis(SEXP, SEXP)’: splines.cc:58:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ splines.cc: In function ‘SEXPREC* boom_spike_slab_Ispline_basis(SEXP, SEXP)’: splines.cc:77:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 77 | for (int i = 0; i < x.size(); ++i) { | ~~^~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BoomSpikeSlab.so boom_spike_slab_init.o logit_spike_slab_wrapper.o mlm_spike_slab_wrapper.o nested_regression_wrapper.o nnet_wrapper.o poisson_spike_slab_wrapper.o probit_spike_slab_wrapper.o quantile_spike_wrapper.o shrinkage_regression_wrapper.o spike_slab_wrapper.o splines.o /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Boom/lib/libboom.a -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppZ54a4/R.INSTALL7a75770f87800/BoomSpikeSlab/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BoomSpikeSlab/00new/BoomSpikeSlab/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BoomSpikeSlab) * installing *source* package ‘bigsparser’ ... ** this is package ‘bigsparser’ version ‘0.7.3’ ** package ‘bigsparser’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0E7zsa/R.INSTALL7a7433bfcdfa4/bigsparser/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/InputParameter.h:77:11: required from ‘class Rcpp::ConstReferenceInputParameter >’ 77 | T obj ; | ^~~ RcppExports.cpp:185:74: required from here 185 | Rcpp::traits::input_parameter< const Eigen::VectorXd& >::type b(bSEXP); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/InputParameter.h:77:11: required from ‘class Rcpp::ConstReferenceInputParameter >’ 77 | T obj ; | ^~~ RcppExports.cpp:185:74: required from here 185 | Rcpp::traits::input_parameter< const Eigen::VectorXd& >::type b(bSEXP); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SFBM-xptr.cpp -o SFBM-xptr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dense-accessor.cpp -o dense-accessor.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c diag.cpp -o diag.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prod.cpp -o prod.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.cpp -o solve.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from ../inst/include/bigsparser/EigenMatrixReplacement.h:15, from solve.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ ../inst/include/bigsparser/EigenMatrixReplacement.h:66:25: required from here 66 | const Eigen::VectorXd add_to_diag; | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ ../inst/include/bigsparser/EigenMatrixReplacement.h:66:25: required from here 66 | const Eigen::VectorXd add_to_diag; | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ ../inst/include/bigsparser/EigenMatrixReplacement.h:56:50: required from here 56 | sfbm(sfbm), add_to_diag(Eigen::VectorXd::Zero(sfbm->ncol())) {} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl, Eigen::Matrix, Eigen::Dense>’ 86 | class SolveImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve, Eigen::Matrix >’ 62 | class Solve : public SolveImpl::StorageKind> | ^~~~~ solve.cpp:27:35: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ~~~~~~~~~~~~^~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 2, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 2, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 2>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:59:37: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Product, 2> >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Product, 2> > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Product, 2> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Product, 2>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Product, 2> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:59:33: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 59 | VectorType v_new(rhs-mat*x); //initialize v_new | ~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 38 | >::type Scalar; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:97:47: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 97 | v_new.noalias() = mat*w - beta*v_old; // compute v_new | ~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, 2>, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product, 2>, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product, 2>, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, 2>, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, 2>, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:97:41: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 97 | v_new.noalias() = mat*w - beta*v_old; // compute v_new | ~~~~~~^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:118:31: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 118 | p.noalias()=(w-r2*p_old-r3*p_oold) /r1; // IS NOALIAS REQUIRED? | ~^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:118:40: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 118 | p.noalias()=(w-r2*p_old-r3*p_oold) /r1; // IS NOALIAS REQUIRED? | ~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:118:52: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 118 | p.noalias()=(w-r2*p_old-r3*p_oold) /r1; // IS NOALIAS REQUIRED? | ~~~~~~~~~~~~~~~~~~~~~~~^~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:42:54: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ 37 | return a.template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 98 | return numext::real((*this).cwiseAbs2().sum()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:42:54: required from ‘void Eigen::internal::minres(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = MatrixReplacement; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Preconditioner = Eigen::IdentityPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ 42 | const RealScalar rhsNorm2(rhs.squaredNorm()); | ~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:256:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ 463 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ 37 | return a.template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ 84 | return internal::dot_nocheck::run(*this, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h:64:43: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:345:45: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ ../inst/include/bigsparser/EigenMatrixReplacement.h:93:33: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const MatrixReplacement&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Rhs = Eigen::Matrix; Scalar = double]’ 93 | (lhs.extra()).cwiseProduct(rhs); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ ../inst/include/bigsparser/EigenMatrixReplacement.h:92:66: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const MatrixReplacement&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Rhs = Eigen::Matrix; Scalar = double]’ 92 | dst.noalias() += (lhs.matrix())->cprod(rhs) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 93 | (lhs.extra()).cwiseProduct(rhs); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::MINRES; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]’ 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; Derived = Eigen::Matrix]’ 594 | _set_noalias(other); | ~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 423 | : Base(other.derived()) | ^ solve.cpp:27:37: required from here 27 | Eigen::VectorXd x = solver.solve(b); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spmat-accessor.cpp -o spmat-accessor.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write-indval.cpp -o write-indval.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write-val-compact.cpp -o write-val-compact.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigsparser.so RcppExports.o SFBM-xptr.o dense-accessor.o diag.o prod.o solve.o spmat-accessor.o write-indval.o write-val-compact.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0E7zsa/R.INSTALL7a7433bfcdfa4/bigsparser/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigsparser/00new/bigsparser/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘diag’ from package ‘base’ in package ‘bigsparser’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigsparser) begin installing package ‘bigsnpr’ * installing *source* package ‘gaselect’ ... ** this is package ‘gaselect’ version ‘1.0.23’ ** package ‘gaselect’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-14 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking climits usability... yes checking climits presence... yes checking for climits... yes Type unsigned long long is supported uint16_t and unit8_t are available in stdint.h uint16_t and unit8_t are available in inttypes.h Found builtin CTZ method (for unsigned long) Found builtin CTZ method (for unsigned long long) checking for ffsl... yes checking for ffsll... yes Found builtin popcount method (for unsigned long) Found builtin popcount method (for unsigned long long) checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/autoconfig.h ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwnpMee/R.INSTALL7a75f53e0d303/gaselect/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c BICEvaluator.cpp -o BICEvaluator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c Chromosome.cpp -o Chromosome.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c GenAlg.cpp -o GenAlg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c LMEvaluator.cpp -o LMEvaluator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c Logger.cpp -o Logger.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c MultiThreadedPopulation.cpp -o MultiThreadedPopulation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c PLS.cpp -o PLS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c PLSEvaluator.cpp -o PLSEvaluator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c PLSSimpls.cpp -o PLSSimpls.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c RNG.cpp -o RNG.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c ShuffledSet.cpp -o ShuffledSet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c SingleThreadPopulation.cpp -o SingleThreadPopulation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__STDC_LIMIT_MACROS -fpic -g -O2 -Wall -pedantic -mtune=native -c UserFunEvaluator.cpp -o UserFunEvaluator.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gaselect.so BICEvaluator.o Chromosome.o GenAlg.o LMEvaluator.o Logger.o MultiThreadedPopulation.o PLS.o PLSEvaluator.o PLSSimpls.o RNG.o ShuffledSet.o SingleThreadPopulation.o UserFunEvaluator.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -pthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwnpMee/R.INSTALL7a75f53e0d303/gaselect/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gaselect/00new/gaselect/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaselect) * installing *source* package ‘SLOPE’ ... ** this is package ‘SLOPE’ version ‘0.5.2’ ** package ‘SLOPE’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp484yFL/R.INSTALL7a7495c3d80cb/SLOPE/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Results.cpp -o Results.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SolverResults.cpp -o SolverResults.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kktCheck.cpp -o kktCheck.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lambdaSequence.cpp -o lambdaSequence.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prox.cpp -o prox.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r-exports.cpp -o r-exports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppSLOPE.cpp -o rcppSLOPE.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rescale.cpp -o rescale.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c screening.cpp -o screening.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c standardize.cpp -o standardize.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SLOPE.so RcppExports.o Results.o SolverResults.o kktCheck.o lambdaSequence.o prox.o r-exports.o rcppSLOPE.o rescale.o screening.o standardize.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp484yFL/R.INSTALL7a7495c3d80cb/SLOPE/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SLOPE/00new/SLOPE/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SLOPE) begin installing package ‘sgs’ * installing *source* package ‘sgs’ ... ** this is package ‘sgs’ version ‘0.3.7’ ** package ‘sgs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeICGig/R.INSTALL7baa0416a77e2/sgs/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c arma_mv.cpp -o arma_mv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c arma_sparse.cpp -o arma_sparse.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sgs.so RcppExports.o arma_mv.o arma_sparse.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeICGig/R.INSTALL7baa0416a77e2/sgs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sgs/00new/sgs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sgs) * installing *source* package ‘shrinkTVP’ ... ** this is package ‘shrinkTVP’ version ‘3.0.1’ ** package ‘shrinkTVP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNpqmXC/R.INSTALL7b03a1bc512f7/shrinkTVP/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DG_MH_step.cpp -o DG_MH_step.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DG_log_ratio_value.cpp -o DG_log_ratio_value.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DG_sampling_functions.cpp -o DG_sampling_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_utilities.cpp -o R_utilities.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TG_MH_step.cpp -o TG_MH_step.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TG_log_ratio_value.cpp -o TG_log_ratio_value.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TG_sampling_functions.cpp -o TG_sampling_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c common_sampling_functions.cpp -o common_sampling_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_utilities.cpp -o cpp_utilities.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c do_rgig1.cpp -o do_rgig1.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dyn_sampling_steps.cpp -o dyn_sampling_steps.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rho_p_MH_step.cpp -o rho_p_MH_step.o rho_p_MH_step.cpp: In function ‘double rho_p_log_ratio_value_marg_oeverything(double, double, const arma::vec&, double, double, double, double, double, double, double)’: rho_p_MH_step.cpp:26:10: warning: unused variable ‘lone_minus_prop’ [-Wunused-variable] 26 | double lone_minus_prop = std::log(1 - proposal); | ^~~~~~~~~~~~~~~ rho_p_MH_step.cpp:27:10: warning: unused variable ‘lone_minus_old’ [-Wunused-variable] 27 | double lone_minus_old = std::log(1 - old_val); | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_DG_TVP.cpp -o sample_DG_TVP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_TG_TVP.cpp -o sample_TG_TVP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_beta_McCausland.cpp -o sample_beta_McCausland.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_beta_McCausland_dyn.cpp -o sample_beta_McCausland_dyn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c shrinkDTVP.cpp -o shrinkDTVP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -DSTRICT_R_HEADERS `/home/hornik/tmp/R/bin/Rscript -e "RcppGSL:::CFlags()"` -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/GIGrvg/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stochvol/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c shrinkTVP.cpp -o shrinkTVP.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o shrinkTVP.so DG_MH_step.o DG_log_ratio_value.o DG_sampling_functions.o R_utilities.o TG_MH_step.o TG_log_ratio_value.o TG_sampling_functions.o common_sampling_functions.o cpp_utilities.o do_rgig1.o dyn_sampling_steps.o exports.o rho_p_MH_step.o sample_DG_TVP.o sample_TG_TVP.o sample_beta_McCausland.o sample_beta_McCausland_dyn.o shrinkDTVP.o shrinkTVP.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNpqmXC/R.INSTALL7b03a1bc512f7/shrinkTVP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-shrinkTVP/00new/shrinkTVP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shrinkTVP) * installing *source* package ‘bigsnpr’ ... ** this is package ‘bigsnpr’ version ‘1.12.18’ ** package ‘bigsnpr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplsLM7k/R.INSTALL7b84c32705916/bigsnpr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c bed-acc-xptr.cpp -o bed-acc-xptr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c bed-fun.cpp -o bed-fun.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c bed-mat-acc.cpp -o bed-mat-acc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c bed-prod-vec.cpp -o bed-prod-vec.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c clumping-bed.cpp -o clumping-bed.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c clumping-cached.cpp -o clumping-cached.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c clumping.cpp -o clumping.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c colstats.cpp -o colstats.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c copy-subset.cpp -o copy-subset.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c corr.cpp -o corr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c corr_with_cov.cpp -o corr_with_cov.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c impute-simple.cpp -o impute-simple.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c lassosum2.cpp -o lassosum2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c ld-scores-sfbm.cpp -o ld-scores-sfbm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c ld-scores.cpp -o ld-scores.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c ldpred2-auto.cpp -o ldpred2-auto.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c ldpred2-sampling.cpp -o ldpred2-sampling.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c ldpred2.cpp -o ldpred2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c multLinReg.cpp -o multLinReg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c prod-bgen.cpp -o prod-bgen.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c project-utils.cpp -o project-utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c read-bgen.cpp -o read-bgen.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c read-plink.cpp -o read-plink.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c sp-colsumssq-sym.cpp -o sp-colsumssq-sym.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c split-LD.cpp -o split-LD.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/bigsparser/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/bigstatsr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmio/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c write-plink.cpp -o write-plink.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigsnpr.so RcppExports.o bed-acc-xptr.o bed-fun.o bed-mat-acc.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o corr_with_cov.o impute-simple.o lassosum2.o ld-scores-sfbm.o ld-scores.o ldpred2-auto.o ldpred2-sampling.o ldpred2.o multLinReg.o prod-bgen.o project-utils.o read-bgen.o read-plink.o sp-colsumssq-sym.o split-LD.o write-plink.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplsLM7k/R.INSTALL7b84c32705916/bigsnpr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigsnpr/00new/bigsnpr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigsnpr) checking gglasso_1.6.tar.gz ... checking changepoints_1.1.0.tar.gz ... checking CompMix_0.1.0.tar.gz ... checking ecpc_3.1.1.tar.gz ... checking FIT_0.0.6.tar.gz ... checking higlasso_0.9.0.tar.gz ... checking ICBioMark_0.1.4.tar.gz ... checking MLGL_1.0.0.tar.gz ... checking PhylogeneticEM_1.8.0.tar.gz ... checking PRSPGx_0.3.0.tar.gz ... checking PIE_1.0.0.tar.gz ... checking dfr_0.1.5.tar.gz ... checking fdaSP_1.1.1.tar.gz ... checking sgs_0.3.7.tar.gz ... checking sharp_1.4.7.tar.gz ... checking sparsegl_1.1.1.tar.gz ... checking tidyfit_0.7.4.tar.gz ... Depends: Package: gglasso Imports: methods Timings: user system elapsed gglasso 35.385 3.388 39.835 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 6 10 Check results summary: gglasso ... OK rdepends_changepoints ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_CompMix ... OK rdepends_dfr ... OK rdepends_ecpc ... NOTE * checking Rd cross-references ... NOTE rdepends_fdaSP ... OK rdepends_FIT ... NOTE * checking C++ specification ... NOTE rdepends_higlasso ... NOTE * checking C++ specification ... NOTE rdepends_ICBioMark ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_MLGL ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_PhylogeneticEM ... OK rdepends_PIE ... OK rdepends_PRSPGx ... OK rdepends_sgs ... OK rdepends_sharp ... OK rdepends_sparsegl ... OK rdepends_tidyfit ... OK Check results changes: Package: changepoints Check: CRAN incoming feasibility Old result: NOTE Package: ecpc Check: CRAN incoming feasibility Old result: NOTE Package: higlasso Check: CRAN incoming feasibility Old result: NOTE Package: ICBioMark Check: CRAN incoming feasibility Old result: NOTE