# Distribution classifier ------------------------------------------------- test_that("class_distri classifies discrete distributions from the stats package", { distis <- c("pois", "nbinom", "binom", "geom", "hyper", "signrank", "multinom") classes <- character(0) for (i in distis) { classes <- c(classes, class_distri(i)) } expect_true(all(classes == "discrete")) }) test_that("class_distri classifies continuous distributions from the stats package", { distis <- c("beta", "cauchy", "chisq", "exp", "f", "gamma", "lnorm", "norm", "t", "unif", "weibull", "logis") classes <- character(0) for (i in distis) { classes <- c(classes, class_distri(i)) } expect_true(all(classes == "continuous")) }) test_that("class_distri identifies unknown distributions correctly", { rxyz <- function(n, mean = 0, sd = 1) {rnorm(n, mean, sd)} rzyx <- function(n, lambda) {rpois(n, lambda)} test <- class_distri("xyz") expect_equal(test, "continuous") test <- class_distri("zyx") expect_equal(test, "discrete") }) # Warning tester ---------------------------------------------------------- basic <- ggplot(iris, aes(x = Sepal.Length, colour = Species)) + geom_density() test_that("stat_theodensity warns about hypergeometric and multinomial distributions", { expect_error(basic + stat_theodensity(distri = "hyper")) expect_error(basic + stat_theodensity(distri = "multinomial")) }) test_that("stat_theodensity warns about discrete distributions with continuous data", { plot <- basic + stat_theodensity(distri = "binom") expect_error(ggplot_build(plot)) }) test_that("stat_theodensity skips groups with less than two datapoints", { # Only include 1 setosa observation plot <- ggplot(iris[c(1,51:150),], aes(x = Sepal.Length, colour = Species)) + stat_theodensity() expect_warning(dat <- layer_data(plot)) tab <- as.numeric(table(dat$group)) expect_equal(tab, c(1, 512, 512)) expect_true(all(c(is.na(dat$y[1]), is.na(dat$x[1]), is.na(dat$density[1]), is.na(dat$count[1]), is.na(dat$n[1]), is.na(dat$scaled[1])))) expect_false(any(c(is.na(dat$y[-1]), is.na(dat$x[-1]), is.na(dat$density[-1]), is.na(dat$count[-1]), is.na(dat$n[-1]), is.na(dat$scaled[-1])))) }) # Discrete distributions -------------------------------------------------- dat <- faithful$waiting dat_by_distri <- function(distri) { g <- ggplot(faithful, aes(x = waiting)) + stat_theodensity(distri = distri) layer_data(g) } test_that("stat_theodensity fits poisson", { df <- dat_by_distri("pois") expect_equal(df$x, seq(min(dat), max(dat), by = 1)) thismax <- df$x[which.max(df$y)] expect_lt(abs(mean(dat) - thismax), 10) }) test_that("stat_theodensity fits geometric", { df <- dat_by_distri("geom") expect_equal(df$x, seq(min(dat), max(dat), by = 1)) }) test_that("stat_theodensity fits negative binomial", { df <- dat_by_distri("nbinom") expect_equal(df$x, seq(min(dat), max(dat), by = 1)) thismax <- df$x[which.max(df$y)] expect_lt(abs(mean(dat) - thismax), 10) }) test_that("stat_theodensity fits binomial", { expect_message(df <- dat_by_distri("binom")) expect_equal(df$x, seq(min(dat), max(dat), by = 1)) thismax <- df$x[which.max(df$y)] expect_lt(abs(mean(dat) - thismax), 10) }) test_that("stat_theodensity fits sign rank", { expect_error(dat_by_distri("signrank")) }) test_that("stat_theodensity fits wilcoxon", { expect_error(dat_by_distri("wilcox")) }) # continuous distributions ------------------------------------------------ test_that("stat_theodensity fits beta", { set.seed(1) d <- data.frame(x = rbeta(500, 0.5, 0.5)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "beta") ld <- layer_data(g) expect_equal(nrow(ld), 512) # Beta with 0.5, 0.5 shapes should have two maxima expect_true(all(diff(ld$y[1:200]) < 0)) expect_true(all(diff(ld$y[313:512]) > 0)) }) test_that("stat_theodensity fits cauchy", { set.seed(1) d <- data.frame(x = rcauchy(500, 10, 1)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "cauchy", n = 1e4) ld <- layer_data(g) expect_equal(nrow(ld), 1e4) max <- ld$x[which.max(ld$y)] expect_lt(abs(10 - max), 0.5) expect_true(all(diff(ld$y[which.max(ld$y):1e4]) < 0)) expect_true(all(diff(ld$y[1:which.max(ld$y)]) > 0)) }) test_that("stat_theodensity fits chi squared", { set.seed(1) k <- 3 d <- data.frame(x = rchisq(500, k, 0)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "chisq") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) # Mode of chisq is max(k - 2, 0) expect_lt(abs(k - 2 - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits exponential", { set.seed(1) d <- data.frame(x = rexp(500, 1)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "exp") ld <- layer_data(g) expect_equal(nrow(ld), 512) expect_true(all(diff(ld$y) < 0)) }) test_that("stat_theodensity fits F-distribution", { set.seed(1) d1 <- 10 d2 <- 30 d <- data.frame(x = rf(500, d1, d2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "f", start.arg = list(df1 = 4, df2 = 2)) ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expmode <- ((d1 - 2)/d1) * (d2 / (d2 + 2)) expect_lt(abs(median(d$x) - expmode), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits gamma", { set.seed(1) d <- data.frame(x = rgamma(500, 2, 2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "gamma") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(median(d$x) - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits lognormal", { set.seed(1) d <- data.frame(x = rlnorm(500, 2, 1)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "lnorm") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(mean(log(d$x)) - 2), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits normal", { set.seed(1) d <- data.frame(x = rnorm(500, 2, 2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "norm") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(median(d$x) - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits student t", { set.seed(1) d <- data.frame(x = rt(500, 1.5)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "t", start.arg = list(df = 20)) ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(median(d$x) - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits uniform", { set.seed(1) d <- data.frame(x = rgamma(500, 2, 2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "unif") ld <- layer_data(g) expect_equal(nrow(ld), 512) expect_true(all(diff(ld$y) == 0)) }) test_that("stat_theodensity fits weibull", { set.seed(1) d <- data.frame(x = rweibull(500, 2, 2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "weibull") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(median(d$x) - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) }) test_that("stat_theodensity fits logistic", { set.seed(1) d <- data.frame(x = rlogis(500, 2, 2)) g <- ggplot(d, aes(x = x)) + stat_theodensity(distri = "logis") ld <- layer_data(g) expect_equal(nrow(ld), 512) max <- which.max(ld$y) expect_lt(abs(median(d$x) - ld$x[max]), 0.5) expect_true(all(diff(ld$y[max:512]) < 0)) expect_true(all(diff(ld$y[1:max]) > 0)) })