downloading reverse dependencies ... downloading aplot_0.2.6.tar.gz ... ok downloading aplotExtra_0.0.4.tar.gz ... ok downloading fanyi_0.0.7.tar.gz ... ok downloading FossilSim_2.4.1.tar.gz ... ok downloading ggbreak_0.1.4.tar.gz ... ok downloading ggimage_0.3.3.tar.gz ... ok downloading ggtangle_0.0.6.tar.gz ... ok downloading scatterpie_0.2.4.tar.gz ... ok downloading tidydr_0.0.5.tar.gz ... ok downloading delimtools_0.2.0.tar.gz ... ok installing dependencies ‘bGMYC’, ‘ggfun’, ‘ggstar’, ‘maftools’, ‘paleotree’, ‘spider’, ‘splits’, ‘SSEparser’, ‘TreeSim’ Warning: packages ‘bGMYC’, ‘splits’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘maftools’ begin installing package ‘ggstar’ begin installing package ‘SSEparser’ begin installing package ‘paleotree’ begin installing package ‘TreeSim’ begin installing package ‘spider’ begin installing package ‘ggfun’ * installing *source* package ‘SSEparser’ ... ** this is package ‘SSEparser’ version ‘0.1.0’ ** package ‘SSEparser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SSEparser) * installing *source* package ‘spider’ ... ** this is package ‘spider’ version ‘1.5.1’ ** package ‘spider’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spider) * installing *source* package ‘ggstar’ ... ** this is package ‘ggstar’ version ‘1.0.4’ ** package ‘ggstar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstar) * installing *source* package ‘ggfun’ ... ** this is package ‘ggfun’ version ‘0.1.9’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggfun) * installing *source* package ‘TreeSim’ ... ** this is package ‘TreeSim’ version ‘2.4’ ** package ‘TreeSim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TreeSim) * installing *source* package ‘paleotree’ ... ** this is package ‘paleotree’ version ‘3.4.7’ ** package ‘paleotree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paleotree) * installing *source* package ‘maftools’ ... ** this is package ‘maftools’ version ‘2.24.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmploVnRF/R.INSTALL1e3fb261d7b6a9/maftools/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ntcounts.c -o ntcounts.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snpcounts.c -o snpcounts.o snpcounts.c: In function ‘snpcounts’: snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 89 | fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped); | ~~~^ ~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c somaticfreq.c -o somaticfreq.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmploVnRF/R.INSTALL1e3fb261d7b6a9/maftools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-maftools/00new/maftools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maftools) checking ggfun_0.1.9.tar.gz ... checking aplot_0.2.6.tar.gz ... checking aplotExtra_0.0.4.tar.gz ... checking fanyi_0.0.7.tar.gz ... checking FossilSim_2.4.1.tar.gz ... checking ggbreak_0.1.4.tar.gz ... checking ggimage_0.3.3.tar.gz ... checking ggtangle_0.0.6.tar.gz ... checking scatterpie_0.2.4.tar.gz ... checking tidydr_0.0.5.tar.gz ... checking delimtools_0.2.0.tar.gz ... Depends: Package: ggfun Depends: R (>= 4.2.0) Imports: cli, dplyr, ggplot2, grid, rlang, utils, yulab.utils (>= 0.1.6) Timings: user system elapsed ggfun 42.47 4.453 48.969 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 8 Check results summary: ggfun ... OK rdepends_aplot ... OK rdepends_aplotExtra ... OK rdepends_delimtools ... OK rdepends_fanyi ... OK rdepends_FossilSim ... OK rdepends_ggbreak ... OK rdepends_ggimage ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_ggtangle ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_scatterpie ... OK rdepends_tidydr ... OK