downloading reverse dependencies ... downloading aplot_0.2.3.tar.gz ... ok downloading aplotExtra_0.0.2.tar.gz ... ok downloading fanyi_0.0.7.tar.gz ... ok downloading FossilSim_2.4.1.tar.gz ... ok downloading ggbreak_0.1.2.tar.gz ... ok downloading ggimage_0.3.3.tar.gz ... ok downloading ggtangle_0.0.5.tar.gz ... ok downloading scatterpie_0.2.4.tar.gz ... ok downloading tidydr_0.0.5.tar.gz ... ok installing dependencies ‘ggfun’, ‘ggstar’, ‘maftools’, ‘paleotree’, ‘SSEparser’, ‘TreeSim’ begin installing package ‘maftools’ begin installing package ‘ggstar’ begin installing package ‘SSEparser’ begin installing package ‘paleotree’ begin installing package ‘TreeSim’ begin installing package ‘ggfun’ * installing *source* package ‘SSEparser’ ... ** package ‘SSEparser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SSEparser) * installing *source* package ‘ggstar’ ... ** package ‘ggstar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstar) * installing *source* package ‘ggfun’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggfun) * installing *source* package ‘TreeSim’ ... ** package ‘TreeSim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TreeSim) * installing *source* package ‘paleotree’ ... ** package ‘paleotree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paleotree) * installing *source* package ‘maftools’ ... ** package ‘maftools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplmqUkx/R.INSTALL3ec9a13e4038f0/maftools/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ntcounts.c -o ntcounts.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snpcounts.c -o snpcounts.o snpcounts.c: In function ‘snpcounts’: snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 89 | fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped); | ~~~^ ~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c somaticfreq.c -o somaticfreq.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplmqUkx/R.INSTALL3ec9a13e4038f0/maftools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-maftools/00new/maftools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maftools) checking ggfun_0.1.8.tar.gz ... checking aplot_0.2.3.tar.gz ... checking aplotExtra_0.0.2.tar.gz ... checking fanyi_0.0.7.tar.gz ... checking FossilSim_2.4.1.tar.gz ... checking ggbreak_0.1.2.tar.gz ... checking ggimage_0.3.3.tar.gz ... checking ggtangle_0.0.5.tar.gz ... checking scatterpie_0.2.4.tar.gz ... checking tidydr_0.0.5.tar.gz ... Depends: Package: ggfun Depends: R (>= 4.1.0) Imports: cli, dplyr, ggplot2, grid, rlang, utils, yulab.utils (>= 0.1.6) Timings: user system elapsed ggfun 40.053 4.164 46.303 Results: Check status summary: OK Source packages 1 Reverse depends 9 Check results summary: ggfun ... OK rdepends_aplot ... OK rdepends_aplotExtra ... OK rdepends_fanyi ... OK rdepends_FossilSim ... OK rdepends_ggbreak ... OK rdepends_ggimage ... OK rdepends_ggtangle ... OK rdepends_scatterpie ... OK rdepends_tidydr ... OK