skip_on_cran() skip_on_os(c("mac", "solaris")) skip_if_not_installed("datawizard") skip_if_not_installed("withr") test_that("ggpredict, condition", { data(efc, package = "ggeffects") efc$e42dep <- datawizard::to_factor(efc$e42dep) fit <- lm(barthtot ~ c12hour + neg_c_7 + e42dep + c172code, data = efc) expect_s3_class(ggpredict(fit, "c172code"), "data.frame") expect_s3_class(ggpredict(fit, "c172code", condition = c(c12hour = 40)), "data.frame") expect_s3_class(ggpredict(fit, "c172code", condition = c(c12hour = 40, e42dep = "severely dependent")), "data.frame") expect_s3_class(ggpredict(fit, "c172code", condition = c(e42dep = "severely dependent")), "data.frame") dg <- data_grid(fit, "c172code", condition = c(c12hour = 40, e42dep = "severely dependent")) out1 <- ggpredict(fit, "c172code", condition = c(c12hour = 40, e42dep = "severely dependent")) out2 <- predict(fit, newdata = dg) expect_equal(out1$predicted, out2, tolerance = 1e-4, ignore_attr = TRUE) dg <- data_grid(fit, "c172code") out1 <- ggpredict(fit, "c172code") out2 <- predict(fit, newdata = dg) expect_equal(out1$predicted, out2, tolerance = 1e-4, ignore_attr = TRUE) skip_if_not_installed("emmeans") expect_s3_class(ggemmeans(fit, "c172code"), "data.frame") expect_s3_class(ggemmeans(fit, "c172code", condition = c(c12hour = 40)), "data.frame") expect_s3_class(ggemmeans(fit, "c172code", condition = c(c12hour = 40, e42dep = "severely dependent")), "data.frame") expect_s3_class(ggemmeans(fit, "c172code", condition = c(e42dep = "severely dependent")), "data.frame") }) withr::with_environment( new.env(), test_that("ggpredict, condition, glm", { skip_if_not_installed("emmeans") data(efc, package = "ggeffects") efc$e42dep <- datawizard::to_factor(efc$e42dep) efc$neg_c_7d <- as.numeric(efc$neg_c_7 > median(efc$neg_c_7, na.rm = TRUE)) d <- efc m1 <- glm( neg_c_7d ~ c12hour + e42dep + c161sex + c172code, data = d, family = binomial(link = "logit") ) expect_s3_class( ggpredict(m1, "c12hour", condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) expect_s3_class( ggpredict(m1, c("c12hour", "c161sex"), condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) expect_s3_class( ggpredict(m1, c("c12hour", "c161sex", "c172code"), condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) expect_s3_class( ggemmeans(m1, "c12hour", condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) expect_s3_class( ggemmeans(m1, c("c12hour", "c161sex"), condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) expect_s3_class( ggemmeans(m1, c("c12hour", "c161sex", "c172code"), condition = c(e42dep = "severely dependent"), verbose = FALSE), "data.frame" ) out <- ggpredict(m1, "c172code", condition = c(e42dep = "severely dependent"), verbose = FALSE) expect_equal(out$predicted, c(0.60806, 0.64322, 0.67691), tolerance = 1e-3) out <- ggpredict(m1, "c172code", condition = c(e42dep = "independent"), verbose = FALSE) expect_equal(out$predicted, c(0.10815, 0.12351, 0.14071), tolerance = 1e-3) m2 <- glm( neg_c_7d ~ c12hour + e42dep + c161sex + c172code, data = d, family = binomial(link = "logit") ) expect_s3_class(ggpredict(m2, "c12hour", condition = c(c172code = 1), verbose = FALSE), "data.frame") expect_s3_class(ggpredict(m2, c("c12hour", "c161sex"), condition = c(c172code = 2), verbose = FALSE), "data.frame") }) ) withr::with_environment( new.env(), test_that("ggpredict, condition-lmer", { skip_if_not_installed("lme4") data(efc, package = "ggeffects") efc$grp <- datawizard::to_factor(efc$e15relat) efc$e42dep <- datawizard::to_factor(efc$e42dep) d2 <- efc m3 <- lme4::lmer( neg_c_7 ~ c12hour + e42dep + c161sex + c172code + (1 | grp), data = d2 ) pr <- ggpredict(m3, "c12hour", interval = "prediction") expect_equal(pr$predicted[1], 8.962075, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.601748, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(c172code = 1)) expect_equal(pr$predicted[1], 8.62045, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.606084, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(e42dep = "severely dependent")) expect_equal(pr$predicted[1], 12.83257, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.601748, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(e42dep = "severely dependent", c172code = 3)) expect_equal(pr$predicted[1], 13.19621, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.608459, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(e42dep = "severely dependent", c172code = 3, grp = "sibling")) # nolint expect_equal(pr$predicted[1], 13.19621, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.608459, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(c172code = 3, grp = "sibling")) expect_equal(pr$predicted[1], 9.325714, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.608459, tolerance = 1e-3) pr <- ggpredict(m3, "c12hour", interval = "prediction", condition = c(grp = "sibling")) expect_equal(pr$predicted[1], 8.962075, tolerance = 1e-3) expect_equal(pr$std.error[1], 3.601748, tolerance = 1e-3) }) )