skip_on_os(c("mac", "solaris")) skip_if_not_installed("datawizard") skip_if_not_installed("marginaleffects") skip_if_not_installed("lme4") skip_if_not_installed("withr") test_that("ggpredict, condition", { data(efc, package = "ggeffects") efc$grp <- datawizard::to_factor(efc$e15relat) efc$e42dep <- datawizard::to_factor(efc$e42dep) efc$c172code <- datawizard::to_factor(efc$c172code) focal <- c("c12hour [20,30,40]", "c172code") at_list <- list( c12hour = c(20, 30, 40), c172code = levels(efc$c172code) ) model <- lme4::lmer(neg_c_7 ~ c12hour + e42dep + c161sex + c172code + (1 | grp), data = efc) out1 <- ggaverage(model, focal) out2 <- suppressWarnings(marginaleffects::avg_predictions(model, variables = at_list, re.form = NULL)) expect_equal(out1$predicted, out2$estimate, tolerance = 1e-4) expect_equal(out1$conf.low, out2$conf.low, tolerance = 1e-4) expect_snapshot(print(out1)) # valid type arguments expect_error(ggaverage(model, focal, type = "random"), regex = "`type = \"random\"` is not supported") expect_error(ggaverage(model, focal, type = "link"), regex = "`type = \"link\"` is not supported") expect_error(predict_response(model, focal, margin = "ame", type = "random"), regex = "`type = \"random\"` is not supported") expect_error(predict_response(model, focal, margin = "ame", type = "link"), regex = "`type = \"link\"` is not supported") model <- lm(neg_c_7 ~ c12hour + e42dep + c161sex + c172code, data = efc) out1 <- ggaverage(model, focal) out2 <- marginaleffects::avg_predictions(model, variables = at_list) expect_equal(out1$predicted, out2$estimate, tolerance = 1e-4) expect_equal(out1$conf.low, out2$conf.low, tolerance = 1e-4) out1 <- ggaverage(model, focal, ci_level = NA) expect_named(out1, c("x", "predicted", "group")) # vcov skip_if_not_installed("sandwich") out3 <- ggaverage(model, focal, vcov_fun = "HC0") expect_equal( out3$conf.low, c(10.9112, 11.2802, 11.5731, 11.0061, 11.3741, 11.6526, 11.0946, 11.4556, 11.7258), tolerance = 1e-4 ) }) withr::with_environment( new.env(), test_that("ggaverage, glm", { data(efc, package = "ggeffects") efc$neg_c_7d <- as.numeric(efc$neg_c_7 > median(efc$neg_c_7, na.rm = TRUE)) efc$c172code <- datawizard::to_factor(efc$c172code) efc$e42dep <- datawizard::to_factor(efc$e42dep) d <- efc model <- glm( neg_c_7d ~ c12hour + e42dep + c161sex + c172code, data = d, family = binomial(link = "logit") ) focal <- c("c12hour [20,30,40]", "c172code") at_list <- list( c12hour = c(20, 30, 40), c172code = levels(efc$c172code) ) out1 <- ggaverage(model, focal) out2 <- marginaleffects::avg_predictions(model, variables = at_list, type = "invlink(link)") expect_equal(out1$predicted, out2$estimate, tolerance = 1e-4) expect_equal(out1$conf.low, out2$conf.low, tolerance = 1e-4) expect_snapshot(print(out1)) expect_silent(ggaverage(model, focal, type = "link")) expect_silent(predict_response(model, focal, margin = "ame", type = "link")) expect_silent(predict_response(model, focal, margin = "ame", type = "fixed")) expect_error(predict_response(model, focal, margin = "ame", type = "probs")) }) )