downloading reverse dependencies ... downloading ciu_0.8.tar.gz ... ok downloading CRMetrics_0.3.2.tar.gz ... ok downloading dabestr_2025.3.15.tar.gz ... ok downloading esci_1.0.7.tar.gz ... ok downloading ggquickeda_0.3.2.tar.gz ... ok downloading ggrastr_1.0.2.tar.gz ... ok downloading InteractionPoweR_0.2.2.tar.gz ... ok downloading interpretCI_0.1.1.tar.gz ... ok downloading MLwrap_0.2.3.tar.gz ... ok downloading rbiom_2.2.1.tar.gz ... ok downloading scCustomize_3.2.2.tar.gz ... ok downloading sistmr_0.1.1.tar.gz ... ok downloading spotoroo_0.1.5.tar.gz ... ok downloading tidyplots_0.3.1.tar.gz ... ok downloading afex_1.5-0.tar.gz ... ok downloading audiometry_0.3.0.tar.gz ... ok downloading bench_1.1.4.tar.gz ... ok downloading celltrackR_1.2.2.tar.gz ... ok downloading cvequality_0.2.0.tar.gz ... ok downloading ecotourism_0.1.0.tar.gz ... ok downloading ggiraph_0.9.2.tar.gz ... ok downloading ggprism_1.0.7.tar.gz ... ok downloading ggrepel_0.9.6.tar.gz ... ok downloading iNZightPlots_2.16.0.tar.gz ... ok downloading lay_0.1.3.tar.gz ... ok downloading lionfish_1.0.27.tar.gz ... ok downloading model4you_0.9-8.tar.gz ... ok downloading nestedcv_0.8.0.tar.gz ... ok downloading pcutils_0.2.8.tar.gz ... ok downloading pixarfilms_0.2.1.tar.gz ... ok downloading SCpubr_3.0.0.tar.gz ... ok downloading serocalculator_1.3.0.tar.gz ... ok downloading shapr_1.0.6.tar.gz ... ok downloading vipor_0.4.7.tar.gz ... ok installing dependencies ‘and’, ‘beanplot’, ‘BlandAltmanLeh’, ‘Boruta’, ‘brulee’, ‘brunnermunzel’, ‘chngpt’, ‘conos’, ‘decoupleR’, ‘dittoSeq’, ‘DropletUtils’, ‘eulerr’, ‘expss’, ‘fastshap’, ‘fillpattern’, ‘fractaldim’, ‘ggbeeswarm’, ‘ggdensity’, ‘gghalves’, ‘ggmosaic’, ‘ggpol’, ‘ggprism’, ‘ggResidpanel’, ‘ggstance’, ‘ggVennDiagram’, ‘hextri’, ‘hsstan’, ‘infercnv’, ‘innsight’, ‘iNZightMR’, ‘iNZightTools’, ‘legendry’, ‘matrixTests’, ‘MEMSS’, ‘moonBook’, ‘Nebulosa’, ‘pagoda2’, ‘PairedData’, ‘prettycode’, ‘qrcode’, ‘r.proxy’, ‘relaimpo’, ‘revtools’, ‘rliger’, ‘s20x’, ‘sadists’, ‘sccore’, ‘scuttle’, ‘SoupX’, ‘ssdtools’, ‘statpsych’, ‘treemap’, ‘tsne’, ‘UCell’, ‘vioplot’, ‘voronoiTreemap’, ‘waffle’, ‘wordspace’ Warning: packages ‘ggmosaic’, ‘waffle’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘easy.utils’, ‘RcppSpdlog’, ‘hdf5r.Extra’, ‘HighFive’, ‘findpython’, ‘leidenAlg’, ‘N2R’, ‘dendsort’, ‘drat’, ‘RMTstat’, ‘Rook’, ‘PDQutils’, ‘mnonr’, ‘kyotil’, ‘RcppPlanc’, ‘sparsesvd’, ‘maditr’, ‘polylabelr’, ‘ngram’, ‘phyclust’, ‘HiddenMarkov’, ‘argparse’, ‘BiocNeighbors’, ‘ssddata’, ‘universals’ begin installing package ‘easy.utils’ begin installing package ‘RcppSpdlog’ begin installing package ‘HighFive’ begin installing package ‘findpython’ begin installing package ‘dendsort’ begin installing package ‘drat’ begin installing package ‘RMTstat’ begin installing package ‘Rook’ begin installing package ‘PDQutils’ begin installing package ‘mnonr’ begin installing package ‘kyotil’ begin installing package ‘sparsesvd’ begin installing package ‘maditr’ begin installing package ‘polylabelr’ begin installing package ‘ngram’ begin installing package ‘phyclust’ begin installing package ‘HiddenMarkov’ begin installing package ‘BiocNeighbors’ begin installing package ‘ssddata’ begin installing package ‘universals’ begin installing package ‘sccore’ begin installing package ‘SoupX’ begin installing package ‘brunnermunzel’ begin installing package ‘legendry’ begin installing package ‘ggstance’ begin installing package ‘moonBook’ begin installing package ‘PairedData’ begin installing package ‘innsight’ * installing *source* package ‘HighFive’ ... ** this is package ‘HighFive’ version ‘3.2.0’ ** package ‘HighFive’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HighFive) begin installing package ‘fastshap’ * installing *source* package ‘findpython’ ... ** this is package ‘findpython’ version ‘1.0.9’ ** package ‘findpython’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findpython) begin installing package ‘brulee’ * installing *source* package ‘universals’ ... ** this is package ‘universals’ version ‘0.0.5’ ** package ‘universals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (universals) * installing *source* package ‘drat’ ... ** this is package ‘drat’ version ‘0.2.5’ ** package ‘drat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drat) begin installing package ‘fillpattern’ begin installing package ‘ggdensity’ * installing *source* package ‘RMTstat’ ... ** this is package ‘RMTstat’ version ‘0.3.1’ ** package ‘RMTstat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMTstat) begin installing package ‘prettycode’ * installing *source* package ‘dendsort’ ... ** this is package ‘dendsort’ version ‘0.3.4’ ** package ‘dendsort’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendsort) begin installing package ‘tsne’ * installing *source* package ‘mnonr’ ... ** this is package ‘mnonr’ version ‘1.0.0’ ** package ‘mnonr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mnonr) begin installing package ‘ggprism’ * installing *source* package ‘PDQutils’ ... ** this is package ‘PDQutils’ version ‘0.1.6’ ** package ‘PDQutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PDQutils) begin installing package ‘dittoSeq’ * installing *source* package ‘brunnermunzel’ ... ** this is package ‘brunnermunzel’ version ‘2.0’ ** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzhYc9M/R.INSTALL2db1692973eb7e/brunnermunzel/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rf_wrapper.c -o Rf_wrapper.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c bm_permutation_stat.f -o bm_permutation_stat.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c bm_permutation_test.f -o bm_permutation_test.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c bm_test.f -o bm_test.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c calc_statistics.f -o calc_statistics.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c combination.f -o combination.o combination.f:53:10: 53 | if (key(r).eq.1) then | ^ Warning: ‘MEM[(integer(kind=4)[0:D.4701] *)_61][_126]’ may be used uninitialized [-Wmaybe-uninitialized] combination.f:56:72: 56 | arr(r) = bef(r) + 1 | ^ Warning: ‘MEM[(integer(kind=4)[0:D.4705] *)_59][_126]’ may be used uninitialized [-Wmaybe-uninitialized] gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c divide_groups.f -o divide_groups.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rank.f -o rank.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o brunnermunzel.so Rf_wrapper.o bm_permutation_stat.o bm_permutation_test.o bm_test.o calc_statistics.o combination.o divide_groups.o rank.o registerDynamicSymbol.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzhYc9M/R.INSTALL2db1692973eb7e/brunnermunzel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brunnermunzel/00new/brunnermunzel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brunnermunzel) begin installing package ‘ggbeeswarm’ * installing *source* package ‘maditr’ ... ** this is package ‘maditr’ version ‘0.8.6’ ** package ‘maditr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maditr) begin installing package ‘scuttle’ * installing *source* package ‘tsne’ ... ** this is package ‘tsne’ version ‘0.1-3.1’ ** package ‘tsne’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tsne) begin installing package ‘BlandAltmanLeh’ * installing *source* package ‘prettycode’ ... ** this is package ‘prettycode’ version ‘1.1.0’ ** package ‘prettycode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettycode) begin installing package ‘MEMSS’ * installing *source* package ‘ssddata’ ... ** this is package ‘ssddata’ version ‘1.0.0’ ** package ‘ssddata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssddata) begin installing package ‘ggpol’ * installing *source* package ‘easy.utils’ ... ** this is package ‘easy.utils’ version ‘0.1.0’ ** package ‘easy.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (easy.utils) begin installing package ‘ggResidpanel’ * installing *source* package ‘Rook’ ... ** this is package ‘Rook’ version ‘1.2’ ** package ‘Rook’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSIj3bD/R.INSTALL2db10f6a33f59a/Rook/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rook.c -o rook.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rook.so rook.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSIj3bD/R.INSTALL2db10f6a33f59a/Rook/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rook/00new/Rook/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rook) begin installing package ‘fractaldim’ * installing *source* package ‘HiddenMarkov’ ... ** this is package ‘HiddenMarkov’ version ‘1.8-14’ ** package ‘HiddenMarkov’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZseDAg/R.INSTALL2db153116c4ab0/HiddenMarkov/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HiddenMarkov_init.c -o HiddenMarkov_init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dthmm.f -o dthmm.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c extract.f -o extract.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mmpp.f -o mmpp.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c multiply.f -o multiply.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o HiddenMarkov.so HiddenMarkov_init.o dthmm.o extract.o mmpp.o multiply.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZseDAg/R.INSTALL2db153116c4ab0/HiddenMarkov/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-HiddenMarkov/00new/HiddenMarkov/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiddenMarkov) begin installing package ‘iNZightMR’ * installing *source* package ‘BlandAltmanLeh’ ... ** this is package ‘BlandAltmanLeh’ version ‘0.3.1’ ** package ‘BlandAltmanLeh’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BlandAltmanLeh) begin installing package ‘iNZightTools’ * installing *source* package ‘moonBook’ ... ** this is package ‘moonBook’ version ‘0.3.1’ ** package ‘moonBook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moonBook) begin installing package ‘s20x’ * installing *source* package ‘ngram’ ... ** this is package ‘ngram’ version ‘3.2.3’ ** package ‘ngram’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSjJQ8V/R.INSTALL2db14e70e4f678/ngram/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asweka.c -o asweka.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c babble.c -o babble.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constructor.c -o constructor.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c converters.c -o converters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count.c -o count.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getseed.c -o getseed.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram_native.c -o ngram_native.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phrase_table.c -o phrase_table.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/counts.c -o ngram/src/counts.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/gen.c -o ngram/src/gen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/hash.c -o ngram/src/hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/lex.c -o ngram/src/lex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/process.c -o ngram/src/process.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/wordcmp.c -o ngram/src/wordcmp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mt/rand_mt.c -o ngram/src/rand/mt/rand_mt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mrg/rand_mrg.c -o ngram/src/rand/mrg/rand_mrg.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/rng_interface.c -o ngram/src/rand/rng_interface.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/samplers.c -o ngram/src/rand/samplers.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ngram.so asweka.o babble.o constructor.o converters.o count.o getseed.o ngram_native.o phrase_table.o print.o ngram/src/counts.o ngram/src/gen.o ngram/src/hash.o ngram/src/lex.o ngram/src/process.o ngram/src/wordcmp.o ngram/src/rand/mt/rand_mt.o ngram/src/rand/mrg/rand_mrg.o ngram/src/rand/rng_interface.o ngram/src/rand/samplers.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSjJQ8V/R.INSTALL2db14e70e4f678/ngram/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ngram/00new/ngram/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ngram) begin installing package ‘hextri’ * installing *source* package ‘ggstance’ ... ** this is package ‘ggstance’ version ‘0.3.7’ ** package ‘ggstance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstance) begin installing package ‘matrixTests’ * installing *source* package ‘PairedData’ ... ** this is package ‘PairedData’ version ‘1.1.1’ ** package ‘PairedData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘summary’ in package ‘PairedData’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PairedData) begin installing package ‘Boruta’ * installing *source* package ‘sparsesvd’ ... ** this is package ‘sparsesvd’ version ‘0.2-3’ ** package ‘sparsesvd’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvO4gpi/R.INSTALL2db13f6687a104/sparsesvd/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c las2.c -o las2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c main.c -o main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c svdlib.c -o svdlib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c svdutil.c -o svdutil.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sparsesvd.so las2.o main.o svdlib.o svdutil.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvO4gpi/R.INSTALL2db13f6687a104/sparsesvd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparsesvd/00new/sparsesvd/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparsesvd) begin installing package ‘hsstan’ * installing *source* package ‘fillpattern’ ... ** this is package ‘fillpattern’ version ‘1.0.2’ ** package ‘fillpattern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fillpattern) begin installing package ‘gghalves’ * installing *source* package ‘fractaldim’ ... ** this is package ‘fractaldim’ version ‘0.8-5’ ** package ‘fractaldim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fractaldim) begin installing package ‘relaimpo’ * installing *source* package ‘ggbeeswarm’ ... ** this is package ‘ggbeeswarm’ version ‘0.7.3’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggbeeswarm) begin installing package ‘treemap’ * installing *source* package ‘ggdensity’ ... ** this is package ‘ggdensity’ version ‘1.0.0’ ** package ‘ggdensity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggdensity) begin installing package ‘voronoiTreemap’ * installing *source* package ‘hextri’ ... ** this is package ‘hextri’ version ‘0.9.17’ ** package ‘hextri’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hextri) begin installing package ‘r.proxy’ * installing *source* package ‘polylabelr’ ... ** this is package ‘polylabelr’ version ‘0.3.0’ ** package ‘polylabelr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdS7168/R.INSTALL2db1493933fc56/polylabelr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c poi.cpp -o poi.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o polylabelr.so RcppExports.o poi.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdS7168/R.INSTALL2db1493933fc56/polylabelr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-polylabelr/00new/polylabelr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polylabelr) begin installing package ‘ggVennDiagram’ * installing *source* package ‘Boruta’ ... ** this is package ‘Boruta’ version ‘9.0.0’ ** package ‘Boruta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Boruta) begin installing package ‘decoupleR’ * installing *source* package ‘ggprism’ ... ** this is package ‘ggprism’ version ‘1.0.7’ ** package ‘ggprism’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggprism) begin installing package ‘and’ * installing *source* package ‘MEMSS’ ... ** this is package ‘MEMSS’ version ‘0.9-3’ ** package ‘MEMSS’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MEMSS) begin installing package ‘qrcode’ * installing *source* package ‘iNZightMR’ ... ** this is package ‘iNZightMR’ version ‘2.3.0’ ** package ‘iNZightMR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iNZightMR) begin installing package ‘beanplot’ * installing *source* package ‘r.proxy’ ... ** this is package ‘r.proxy’ version ‘0.1.3’ ** package ‘r.proxy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (r.proxy) begin installing package ‘vioplot’ * installing *source* package ‘matrixTests’ ... ** this is package ‘matrixTests’ version ‘0.2.3.1’ ** package ‘matrixTests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixTests) begin installing package ‘hdf5r.Extra’ * installing *source* package ‘s20x’ ... ** this is package ‘s20x’ version ‘3.1-40’ ** package ‘s20x’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (s20x) begin installing package ‘argparse’ * installing *source* package ‘and’ ... ** this is package ‘and’ version ‘0.1.6’ ** package ‘and’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (and) begin installing package ‘sadists’ * installing *source* package ‘kyotil’ ... ** this is package ‘kyotil’ version ‘2024.11-01’ ** package ‘kyotil’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOqaDHs/R.INSTALL2db14b34f3a067/kyotil/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Call_kernel.c -o Call_kernel.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Call_matrix.c -o Call_matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fromKutil.c -o fromKutil.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kernels.c -o kernels.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sresids.c -o sresids.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o kyotil.so Call_kernel.o Call_matrix.o fromKutil.o kernels.o matrix.o registerDynamicSymbol.o sresids.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOqaDHs/R.INSTALL2db14b34f3a067/kyotil/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kyotil/00new/kyotil/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kyotil) begin installing package ‘statpsych’ * installing *source* package ‘beanplot’ ... ** this is package ‘beanplot’ version ‘1.3.1’ ** package ‘beanplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (beanplot) begin installing package ‘chngpt’ * installing *source* package ‘qrcode’ ... ** this is package ‘qrcode’ version ‘0.3.0’ ** package ‘qrcode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qrcode) begin installing package ‘wordspace’ * installing *source* package ‘voronoiTreemap’ ... ** this is package ‘voronoiTreemap’ version ‘0.2.0’ ** package ‘voronoiTreemap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (voronoiTreemap) begin installing package ‘expss’ * installing *source* package ‘ggpol’ ... ** this is package ‘ggpol’ version ‘0.0.7’ ** package ‘ggpol’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpol) begin installing package ‘eulerr’ * installing *source* package ‘gghalves’ ... ** this is package ‘gghalves’ version ‘0.1.4’ ** package ‘gghalves’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghalves) begin installing package ‘revtools’ * installing *source* package ‘ggResidpanel’ ... ** this is package ‘ggResidpanel’ version ‘0.3.0’ ** package ‘ggResidpanel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggResidpanel) begin installing package ‘ssdtools’ * installing *source* package ‘vioplot’ ... ** this is package ‘vioplot’ version ‘0.5.1’ ** package ‘vioplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vioplot) begin installing package ‘Nebulosa’ * installing *source* package ‘sadists’ ... ** this is package ‘sadists’ version ‘0.2.5’ ** package ‘sadists’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sadists) * installing *source* package ‘argparse’ ... ** this is package ‘argparse’ version ‘2.3.1’ ** package ‘argparse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argparse) * installing *source* package ‘legendry’ ... ** this is package ‘legendry’ version ‘0.2.4’ ** package ‘legendry’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (legendry) * installing *source* package ‘ggVennDiagram’ ... ** this is package ‘ggVennDiagram’ version ‘1.5.4’ ** package ‘ggVennDiagram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggVennDiagram) * installing *source* package ‘iNZightTools’ ... ** this is package ‘iNZightTools’ version ‘2.0.3’ ** package ‘iNZightTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iNZightTools) * installing *source* package ‘treemap’ ... ** this is package ‘treemap’ version ‘2.4-4’ ** package ‘treemap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treemap) * installing *source* package ‘fastshap’ ... ** this is package ‘fastshap’ version ‘0.1.1’ ** package ‘fastshap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ1MaA0/R.INSTALL2db3dc77810573/fastshap/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c fastshap.cpp -o fastshap.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastshap.so RcppExports.o fastshap.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ1MaA0/R.INSTALL2db3dc77810573/fastshap/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastshap/00new/fastshap/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastshap) * installing *source* package ‘decoupleR’ ... ** this is package ‘decoupleR’ version ‘2.16.0’ ** package ‘decoupleR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (decoupleR) * installing *source* package ‘relaimpo’ ... ** this is package ‘relaimpo’ version ‘2.2-7’ ** package ‘relaimpo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (relaimpo) * installing *source* package ‘hdf5r.Extra’ ... ** this is package ‘hdf5r.Extra’ version ‘0.1.0’ ** package ‘hdf5r.Extra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdf5r.Extra) begin installing package ‘RcppPlanc’ * installing *source* package ‘brulee’ ... ** this is package ‘brulee’ version ‘0.6.0’ ** package ‘brulee’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brulee) * installing *source* package ‘revtools’ ... ** this is package ‘revtools’ version ‘0.4.1’ ** package ‘revtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (revtools) * installing *source* package ‘statpsych’ ... ** this is package ‘statpsych’ version ‘1.8.0’ ** package ‘statpsych’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statpsych) * installing *source* package ‘expss’ ... ** this is package ‘expss’ version ‘0.11.7’ ** package ‘expss’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (expss) * installing *source* package ‘innsight’ ... ** this is package ‘innsight’ version ‘0.3.2’ ** package ‘innsight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (innsight) * installing *source* package ‘dittoSeq’ ... ** this is package ‘dittoSeq’ version ‘1.22.0’ ** package ‘dittoSeq’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dittoSeq) * installing *source* package ‘wordspace’ ... ** this is package ‘wordspace’ version ‘0.2-9’ ** package ‘wordspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWEGu81/R.INSTALL2dc73e2125b90c/wordspace/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wordspace.cpp -o wordspace.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o wordspace.so RcppExports.o wordspace.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWEGu81/R.INSTALL2dc73e2125b90c/wordspace/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-wordspace/00new/wordspace/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wordspace) * installing *source* package ‘phyclust’ ... ** this is package ‘phyclust’ version ‘0.1-34’ ** package ‘phyclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIENbUX/R.INSTALL2db1506b4f87ce/phyclust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust.c -o R_phyclust.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_edist.c -o R_phyclust_edist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_em_step.c -o R_phyclust_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_find_consensus.c -o R_phyclust_find_consensus.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_label.c -o R_phyclust_label.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logL.c -o R_phyclust_logL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logPt.c -o R_phyclust_logPt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_qmatrix.c -o R_phyclust_qmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se.c -o R_phyclust_se.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se_update.c -o R_phyclust_se_update.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_struct.c -o R_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_update.c -o R_phyclust_update.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRand.c -o RRand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_RRand.c -o R_RRand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_ape_nj.c -o phyclust/phyclust_ape_nj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_edist.c -o phyclust/phyclust_edist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_control.c -o phyclust/phyclust_em_control.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_fp.c -o phyclust/phyclust_em_fp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_phyclust_struct.c -o phyclust/phyclust_em_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_step.c -o phyclust/phyclust_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_tool.c -o phyclust/phyclust_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_file_input.c -o phyclust/phyclust_file_input.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method.c -o phyclust/phyclust_init_method.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_ex.c -o phyclust/phyclust_init_method_ex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_kmed.c -o phyclust/phyclust_init_method_kmed.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_nj.c -o phyclust/phyclust_init_method_nj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_pam.c -o phyclust/phyclust_init_method_pam.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_procedure.c -o phyclust/phyclust_init_procedure.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_label.c -o phyclust/phyclust_label.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_logpL.c -o phyclust/phyclust_logpL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_optim_nmmin.c -o phyclust/phyclust_optim_nmmin.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_pam.c -o phyclust/phyclust_pam.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix_array.c -o phyclust/phyclust_qmatrix_array.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix.c -o phyclust/phyclust_qmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_step.c -o phyclust/phyclust_se_convolution_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_tool.c -o phyclust/phyclust_se_convolution_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_logpL.c -o phyclust/phyclust_se_convolution_logpL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_fp.c -o phyclust/phyclust_se_em_fp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_phyclust_struct.c -o phyclust/phyclust_se_em_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_tool.c -o phyclust/phyclust_se_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_pmatrix.c -o phyclust/phyclust_se_pmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_struct.c -o phyclust/phyclust_se_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_struct.c -o phyclust/phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_tool.c -o phyclust/phyclust_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms.c -o msdir/ms.o msdir/ms.c: In function ‘gensam’: msdir/ms.c:291:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 291 | else if( segsitesin > 0 ) { | ^~~~ msdir/ms.c:337:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 337 | free(seglst); | ^~~~ msdir/ms.c: In function ‘gasdev’: msdir/ms.c:1149:22: warning: variable ‘gset’ set but not used [-Wunused-but-set-variable] 1149 | static float gset; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms_main.c -o msdir/ms_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_ms_main.c -o msdir/R_ms_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_rand.c -o msdir/R_rand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/streec.c -o msdir/streec.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/aamodels.c -o seq-gen/aamodels.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/eigen.c -o seq-gen/eigen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/evolve.c -o seq-gen/evolve.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/gamma.c -o seq-gen/gamma.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/global.c -o seq-gen/global.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/model.c -o seq-gen/model.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/nucmodels.c -o seq-gen/nucmodels.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/R_seq-gen_main.c -o seq-gen/R_seq-gen_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/seq-gen.c -o seq-gen/seq-gen.o seq-gen/seq-gen.c: In function ‘ReadFileParams’: seq-gen/seq-gen.c:715:15: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 715 | char *i; //WCC:add | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/treefile.c -o seq-gen/treefile.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/twister.c -o seq-gen/twister.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c paml_baseml/baseml.c -o paml_baseml/baseml.o In file included from paml_baseml/baseml.c:130: paml_baseml/treesub.c: In function ‘ReadSeq’: paml_baseml/treesub.c:164:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 164 | char *tmp_c; | ^~~~~ paml_baseml/treesub.c:163:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 163 | int tmp; | ^~~ paml_baseml/treesub.c:160:9: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 160 | char str[4]=" "; | ^~~ paml_baseml/treesub.c:158:10: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 158 | int h,b[3]={0}; | ^ paml_baseml/treesub.c: In function ‘IdenticalSeqs’: paml_baseml/treesub.c:806:17: warning: variable ‘same’ set but not used [-Wunused-but-set-variable] 806 | int is,js,h, same,nkept=com.ns; | ^~~~ paml_baseml/treesub.c: In function ‘DistanceIJ’: paml_baseml/treesub.c:1709:16: warning: variable ‘missing’ set but not used [-Wunused-but-set-variable] 1709 | int h, n=4, missing=0; | ^~~~~~~ paml_baseml/treesub.c: In function ‘ReadTreeB’: paml_baseml/treesub.c:2393:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2393 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2392:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2392 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘ReadTreeN’: paml_baseml/treesub.c:2601:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2601 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2600:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2600 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘GetInitialsTimes’: paml_baseml/treesub.c:3417:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 3417 | for(i=0; iUNREST) GetStepMatrix(line); break; | ^~ paml_baseml/baseml.c:879:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 879 | if(com.model>UNREST) GetStepMatrix(line); break; | ^~~~~ paml_baseml/baseml.c: In function ‘SetxBound’: paml_baseml/paml.h:20:18: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 20 | #define FOR(i,n) for(i=0; i Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c graph_embedding.cpp -o graph_embedding.o graph_embedding.cpp: In function ‘std::unordered_map get_hitting_time_map(const std::vector&, const std::vector&)’: graph_embedding.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for (int v2 = 0; v2 < adjacent_ids.size(); ++v2) { | ~~~^~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘void dfs_hitting_time(const std::vector >&, const std::vector >&, int, std::vector&, path_map_t&, double, int, double, int, double)’: graph_embedding.cpp:130:55: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 130 | if ((current_prob < min_prob && result_paths.size() >= min_visited_verts) || current_prob < min_prob_lower) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:135:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < adjacency_list.at(vertex_id).size(); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘std::pair, std::vector > hitting_time_per_neighbor(const std::vector >&, const std::vector >&, int, double, int, double, int)’: graph_embedding.cpp:156:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | if (start_vertex < 0 || start_vertex >= adjacency_list.size()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In function ‘std::pair >, std::vector > > hitting_time_per_neighbors(const std::vector >&, const std::vector >&, int, int, double, int, double, int, bool)’: graph_embedding.cpp:188:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | if (n_verts <= 0 || n_verts >= adjacency_list.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp: In instantiation of ‘std::vector reorder(const std::vector&, std::vector, size_t) [with T = double; size_t = long unsigned int]’: graph_embedding.cpp:175:31: required from here 175 | auto values_sorted = reorder(values, sorted_ids, max_adj_num); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 39 | for (int i = 0; i < max_size; ++i) { | ~~^~~~~~~~~~ graph_embedding.cpp: In instantiation of ‘std::vector reorder(const std::vector&, std::vector, size_t) [with T = int; size_t = long unsigned int]’: graph_embedding.cpp:176:32: required from here 176 | auto indexes_sorted = reorder(indexes, sorted_ids, max_adj_num); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graph_embedding.cpp:39:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 39 | for (int i = 0; i < max_size; ++i) { | ~~^~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_utils.cpp -o matrix_utils.o matrix_utils.cpp: In function ‘arma::mat jsDist(const arma::mat&)’: matrix_utils.cpp:18:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 18 | for(int i=0; i<(m.n_cols-1); i++) { | ~^~~~~~~~~~~~~ matrix_utils.cpp:20:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 20 | for(int j=i+1; j Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘si_map_t parse_edges(const Rcpp::StringMatrix&, const std::vector&, std::vector&, s_vec_t)’: propagate_labels.cpp:42:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:50:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 50 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:57:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 57 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { // TODO: add informative message in case vertex name is not presented in the map | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::NumericMatrix propagate_labels(const Rcpp::StringMatrix&, const std::vector&, const Rcpp::StringVector&, int, bool, double, double, double, bool)’: propagate_labels.cpp:79:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 79 | if (edge_verts.nrow() != edge_weights.size() || edge_verts.ncol() != 2) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ propagate_labels.cpp:87:7: required from here 87 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size()); | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ propagate_labels.cpp:87:7: required from here 87 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size()); | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ propagate_labels.cpp:87:30: required from here 87 | Mat label_probs = Mat::Zero(vertex_ids.size(), label_ids.size()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ propagate_labels.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 90 | for (size_t i = 0; i < vert_labels.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:105:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 105 | for (int v_id = 0; v_id < vertex_ids.size(); ++v_id) { | ~~~~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:106:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for (int l_id = 0; l_id < label_ids.size(); ++l_id) { | ~~~~~^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ 154 | class BlockImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ 103 | template class Block | ^~~~~ propagate_labels.cpp:153:19: required from here 153 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight; | ~~~~~~~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 38 | >::type Scalar; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ propagate_labels.cpp:153:62: required from here 153 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ propagate_labels.cpp:153:62: required from here 153 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ propagate_labels.cpp:153:62: required from here 153 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘void smooth_count_matrix_c(const std::vector&, Mat&, int, double, double, double, bool, bool, const std::vector&)’: propagate_labels.cpp:172:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 172 | for (size_t row_id = 0; row_id < cm_new.rows(); ++row_id) { | ~~~~~~~^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ propagate_labels.cpp:178:26: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’ 42 | class ArrayWrapper : public ArrayBase > | ^~~~~~~~~~~~ propagate_labels.cpp:178:45: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ 39 | template class ArrayBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ propagate_labels.cpp:178:51: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from ‘class Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >’ 140 | class MatrixWrapper : public MatrixBase > | ^~~~~~~~~~~~~ propagate_labels.cpp:178:60: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘SEXPREC* smooth_count_matrix(const Rcpp::StringMatrix&, const std::vector&, const Rcpp::NumericMatrix&, const std::vector&, int, double, double, double, bool, bool)’: propagate_labels.cpp:216:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 216 | if (edge_verts.nrow() != edge_weights.size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::List adjacentVertices(const Rcpp::StringMatrix&)’: propagate_labels.cpp:262:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 262 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ propagate_labels.cpp: In function ‘Rcpp::List adjacent_vertex_weights(const Rcpp::StringMatrix&, const std::vector&)’: propagate_labels.cpp:286:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 286 | for (size_t i = 0; i < edge_verts.nrow(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Scalar = double]’ 41 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::div_assign_op()); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:173:52: required from here 173 | cm_new.row(row_id) /= sum_weights.at(row_id); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >, Eigen::Dense>’ 94 | class CwiseUnaryOpImpl | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >’ 55 | class CwiseUnaryOp : public CwiseUnaryOpImpl::StorageKind>, internal::no_assignment_operator | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:244:22: required from ‘static Eigen::internal::lpNorm_selector::RealScalar Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; RealScalar = double]’ 244 | return m.cwiseAbs().maxCoeff(); | ~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = -1; Derived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 269 | return internal::lpNorm_selector::run(*this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ propagate_labels.cpp:178:86: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:277: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = add_assign_op]’ 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::add_assign_op; Weak = void]’ 954 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = add_assign_op]’ 890 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, -1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 858 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Block, 1, -1, false>]’ 177 | call_assignment(derived(), other.derived(), internal::add_assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ propagate_labels.cpp:153:62: required from here 153 | cm_new.row(e.v_start) += count_matrix.row(e.v_end) * weight; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >; Func = Eigen::internal::scalar_max_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > > >; Scalar = double]’ 243 | const Index alignedStart = internal::first_default_aligned(xpr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >; typename Eigen::internal::traits::Scalar = double]’ 418 | return internal::redux_impl::run(thisEval, func, derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >; typename Eigen::internal::traits::Scalar = double]’ 448 | return derived().redux(Eigen::internal::scalar_max_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > > >; typename Eigen::internal::traits::Scalar = double]’ 466 | return maxCoeff(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:244:33: required from ‘static Eigen::internal::lpNorm_selector::RealScalar Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; RealScalar = double]’ 244 | return m.cwiseAbs().maxCoeff(); | ~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:269:52: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = -1; Derived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > > > >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ 269 | return internal::lpNorm_selector::run(*this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ propagate_labels.cpp:178:86: required from here 178 | inf_norm = (cm_new - count_matrix).array().abs().matrix().lpNorm(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sccore.so RcppExports.o graph_embedding.o matrix_utils.o propagate_labels.o -lpthread -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvxGGs1/R.INSTALL2db1631793da3a/sccore/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sccore/00new/sccore/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘embeddingPlot’ with signature ‘"Seurat"’: no definition for class “Seurat” Note: wrong number of arguments to '*' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sccore) begin installing package ‘leidenAlg’ * installing *source* package ‘Nebulosa’ ... ** this is package ‘Nebulosa’ version ‘1.20.0’ ** package ‘Nebulosa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Nebulosa) * installing *source* package ‘BiocNeighbors’ ... ** this is package ‘BiocNeighbors’ version ‘2.4.0’ ** package ‘BiocNeighbors’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmmHdS6/R.INSTALL2db15b45b1541f/BiocNeighbors/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c annoy.cpp -o annoy.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c exhaustive.cpp -o exhaustive.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c find_mutual_nns.cpp -o find_mutual_nns.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c generics.cpp -o generics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hnsw.cpp -o hnsw.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmknn.cpp -o kmknn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vptree.cpp -o vptree.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BiocNeighbors.so RcppExports.o annoy.o exhaustive.o find_mutual_nns.o generics.o hnsw.o kmknn.o vptree.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmmHdS6/R.INSTALL2db15b45b1541f/BiocNeighbors/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocNeighbors) begin installing package ‘UCell’ * installing *source* package ‘RcppSpdlog’ ... ** this is package ‘RcppSpdlog’ version ‘0.0.23’ ** package ‘RcppSpdlog’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxm11hw/R.INSTALL2db0fb591d3cd5/RcppSpdlog/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c exampleRsink.cpp -o exampleRsink.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c formatter.cpp -o formatter.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RcppSpdlog.so RcppExports.o exampleRsink.o formatter.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxm11hw/R.INSTALL2db0fb591d3cd5/RcppSpdlog/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppSpdlog/00new/RcppSpdlog/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppSpdlog) begin installing package ‘N2R’ * installing *source* package ‘SoupX’ ... ** this is package ‘SoupX’ version ‘1.6.2’ ** package ‘SoupX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SoupX) * installing *source* package ‘chngpt’ ... ** this is package ‘chngpt’ version ‘2024.11-15’ ** package ‘chngpt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp9lRq7/R.INSTALL2dc6af6591821a/chngpt/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M10.cc -o M10.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M111.cc -o M111.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M20.cc -o M20.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M20c.cc -o M20c.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M22.cc -o M22.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M22c.cc -o M22c.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M30.cc -o M30.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c M33c.cc -o M33c.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Mstep.cc -o Mstep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c doublehinge.c -o doublehinge.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastgrid.cc -o fastgrid.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastgrid2.cc -o fastgrid2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastgrid_helper.cc -o fastgrid_helper.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid.cc -o grid.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c performance.cc -o performance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twoD.cc -o twoD.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o chngpt.so M10.o M111.o M20.o M20c.o M22.o M22c.o M30.o M33c.o Mstep.o doublehinge.o fastgrid.o fastgrid2.o fastgrid_helper.o grid.o performance.o registerDynamicSymbol.o twoD.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp9lRq7/R.INSTALL2dc6af6591821a/chngpt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-chngpt/00new/chngpt/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chngpt) * installing *source* package ‘UCell’ ... ** this is package ‘UCell’ version ‘2.14.0’ ** package ‘UCell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCell) * installing *source* package ‘eulerr’ ... ** this is package ‘eulerr’ version ‘7.0.4’ ** package ‘eulerr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCYooHZ/R.INSTALL2dc859264943c5/eulerr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compute-areas.cpp -o compute-areas.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conic.cpp -o conic.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ellipse.cpp -o ellipse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c helpers.cpp -o helpers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c intersections.cpp -o intersections.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loss.cpp -o loss.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optim_final.cpp -o optim_final.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optim_init.cpp -o optim_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c point.cpp -o point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solve_cubic.cpp -o solve_cubic.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o eulerr.so RcppExports.o compute-areas.o conic.o ellipse.o helpers.o intersections.o loss.o optim_final.o optim_init.o point.o solve_cubic.o utils.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCYooHZ/R.INSTALL2dc859264943c5/eulerr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-eulerr/00new/eulerr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eulerr) * installing *source* package ‘scuttle’ ... ** this is package ‘scuttle’ version ‘1.20.0’ ** package ‘scuttle’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoRccFO/R.INSTALL2db7ea51b091e0/scuttle/src' g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cumulative_prop.cpp -o cumulative_prop.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/beachmat.h:24, from cumulative_prop.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:95:27: warning: ‘virtual const double* beachmat::lin_matrix::get_row(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 95 | virtual const double* get_row(size_t r, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:66:24: warning: ‘virtual const int* beachmat::lin_matrix::get_row(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 66 | virtual const int* get_row(size_t r, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:81:27: warning: ‘virtual const double* beachmat::lin_matrix::get_col(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 81 | virtual const double* get_col(size_t c, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:52:24: warning: ‘virtual const int* beachmat::lin_matrix::get_col(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 52 | virtual const int* get_col(size_t c, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:12: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:36:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 36 | return std::unique_ptr(new integer_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:38:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 38 | return std::unique_ptr(new double_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:40:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 40 | return std::unique_ptr(new logical_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c downsample_counts.cpp -o downsample_counts.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/beachmat.h:24, from downsample_counts.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:95:27: warning: ‘virtual const double* beachmat::lin_matrix::get_row(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 95 | virtual const double* get_row(size_t r, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:66:24: warning: ‘virtual const int* beachmat::lin_matrix::get_row(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 66 | virtual const int* get_row(size_t r, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:81:27: warning: ‘virtual const double* beachmat::lin_matrix::get_col(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 81 | virtual const double* get_col(size_t c, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:52:24: warning: ‘virtual const int* beachmat::lin_matrix::get_col(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 52 | virtual const int* get_col(size_t c, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:12: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:36:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 36 | return std::unique_ptr(new integer_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:38:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 38 | return std::unique_ptr(new double_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:40:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 40 | return std::unique_ptr(new logical_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fit_linear_model.cpp -o fit_linear_model.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/beachmat.h:24, from fit_linear_model.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:95:27: warning: ‘virtual const double* beachmat::lin_matrix::get_row(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 95 | virtual const double* get_row(size_t r, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:66:24: warning: ‘virtual const int* beachmat::lin_matrix::get_row(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 66 | virtual const int* get_row(size_t r, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:81:27: warning: ‘virtual const double* beachmat::lin_matrix::get_col(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 81 | virtual const double* get_col(size_t c, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:52:24: warning: ‘virtual const int* beachmat::lin_matrix::get_col(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 52 | virtual const int* get_col(size_t c, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:12: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:36:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 36 | return std::unique_ptr(new integer_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:38:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 38 | return std::unique_ptr(new double_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:40:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 40 | return std::unique_ptr(new logical_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pool_size_factors.cpp -o pool_size_factors.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/beachmat.h:24, from pool_size_factors.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:95:27: warning: ‘virtual const double* beachmat::lin_matrix::get_row(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 95 | virtual const double* get_row(size_t r, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:66:24: warning: ‘virtual const int* beachmat::lin_matrix::get_row(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 66 | virtual const int* get_row(size_t r, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:81:27: warning: ‘virtual const double* beachmat::lin_matrix::get_col(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 81 | virtual const double* get_col(size_t c, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:52:24: warning: ‘virtual const int* beachmat::lin_matrix::get_col(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 52 | virtual const int* get_col(size_t c, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ pool_size_factors.cpp: In function ‘Rcpp::List pool_size_factors(Rcpp::RObject, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)’: pool_size_factors.cpp:56:15: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 56 | if (ngenes!=pseudo_cell.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ pool_size_factors.cpp:61:22: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 61 | if (order.size() < ncells*2-1) { | ~~~~~~~~~~~~~^~~~~~~~~~~~ pool_size_factors.cpp:170:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 170 | for (auto i=0; i::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:36:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 36 | return std::unique_ptr(new integer_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:38:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 38 | return std::unique_ptr(new double_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:40:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 40 | return std::unique_ptr(new logical_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sparse_summarize.cpp -o sparse_summarize.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sum_counts.cpp -o sum_counts.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:11, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/beachmat.h:24, from sum_counts.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:95:27: warning: ‘virtual const double* beachmat::lin_matrix::get_row(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 95 | virtual const double* get_row(size_t r, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:66:24: warning: ‘virtual const int* beachmat::lin_matrix::get_row(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 66 | virtual const int* get_row(size_t r, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:218:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_row(size_t, int*, int*, size_t, size_t)’ 218 | virtual sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:81:27: warning: ‘virtual const double* beachmat::lin_matrix::get_col(size_t, double*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 81 | virtual const double* get_col(size_t c, double* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:52:24: warning: ‘virtual const int* beachmat::lin_matrix::get_col(size_t, int*, size_t, size_t)’ was hidden [-Woverloaded-virtual=] 52 | virtual const int* get_col(size_t c, int* work, size_t first, size_t last) = 0; | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:236:43: note: by ‘virtual beachmat::sparse_index beachmat::lin_sparse_matrix::get_col(size_t, int*, int*, size_t, size_t)’ 236 | virtual sparse_index get_col(size_t c, int* work_x, int* work_i, size_t first, size_t last) = 0; | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:12: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:36:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 36 | return std::unique_ptr(new integer_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:38:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 38 | return std::unique_ptr(new double_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::SparseArraySeed_reader::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:561:46: required from ‘beachmat::lin_SparseArraySeed::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl]’ 561 | lin_SparseArraySeed(Rcpp::RObject mat) : reader(mat) { | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:40:39: required from ‘std::unique_ptr beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl]’ 40 | return std::unique_ptr(new logical_SparseArraySeed(block)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/read_lin_block.h:65:57: required from here 65 | auto ptr = read_lin_sparse_block_raw(block); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 535 | if (nnz != x.size()) { | ~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 551 | if (lastR <= 0 || lastR > NR || lastC <= 0 || lastC > NC) { | ~~~~~~^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 593 | for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { | ~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:596:51: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 596 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here 595 | sparse_index get_row(size_t r, int* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of ‘beachmat::sparse_index beachmat::Csparse_core::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long unsigned int; size_t = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:650:42: required from ‘beachmat::sparse_index beachmat::SparseArraySeed_reader::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 650 | return core.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:602:54: required from ‘beachmat::sparse_index beachmat::lin_SparseArraySeed::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long unsigned int]’ 602 | return reader.template get_row(r, work_x, work_i, first, last); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here 601 | sparse_index get_row(size_t r, double* work_x, int* work_i, size_t first, size_t last) { | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const long unsigned int’ [-Wsign-compare] 250 | if (idex != *pIt && static_cast(i[idex]) == r) { | ~~~~~^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o scuttle.so RcppExports.o cumulative_prop.o downsample_counts.o fit_linear_model.o pool_size_factors.o sparse_summarize.o sum_counts.o utils.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoRccFO/R.INSTALL2db7ea51b091e0/scuttle/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-scuttle/00new/scuttle/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scuttle) begin installing package ‘DropletUtils’ * installing *source* package ‘infercnv’ ... ** this is package ‘infercnv’ version ‘1.26.0’ ** package ‘infercnv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (infercnv) * installing *source* package ‘ssdtools’ ... ** this is package ‘ssdtools’ version ‘2.4.0’ ** package ‘ssdtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZRsepM/R.INSTALL2dc9e64fdf89b4/ssdtools/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fun.cpp -o fun.o (cd TMB; /home/hornik/tmp/R/bin/Rscript \ --no-save --no-restore compile.R '') Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpZRsepM/R.INSTALL2dc9e64fdf89b4/ssdtools/src/TMB' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ssdtools_TMBExports -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssdtools_TMBExports.cpp -o ssdtools_TMBExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ssdtools_TMBExports.so ssdtools_TMBExports.o -L/home/hornik/tmp/R/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpZRsepM/R.INSTALL2dc9e64fdf89b4/ssdtools/src/TMB' [1] TRUE g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ssdtools.so RcppExports.o fun.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZRsepM/R.INSTALL2dc9e64fdf89b4/ssdtools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ssdtools/00new/ssdtools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssdtools) * installing *source* package ‘N2R’ ... ** this is package ‘N2R’ version ‘1.0.3’ ** package ‘N2R’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4EANCe/R.INSTALL2dddc567032f32/N2R/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -I"./n2/include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -I"./n2/include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c check_openmp.cpp -o check_openmp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -I"./n2/include" -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c n2knn.cpp -o n2knn.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from n2knn.cpp:24: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1040 | SparseMatrix trMat(mat.rows(),mat.cols()); | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ n2knn.cpp:80:22: required from here 80 | mat.setFromTriplets(tripletList.begin(),tripletList.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1181 | const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator::Flags & RowMajorBit); | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ n2knn.cpp:80:22: required from here 80 | mat.setFromTriplets(tripletList.begin(),tripletList.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ 336 | typedef typename DenseCoeffsBase::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ 1505 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ 79 | const bool transpose = (DstEvaluatorType::Flags & RowMajorBit) != (SrcEvaluatorType::Flags & RowMajorBit); | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ 132 | assign_sparse_to_sparse(dst.derived(), src.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from ‘Derived& Eigen::SparseMatrixBase::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; Derived = Eigen::SparseMatrix]’ 37 | internal::Assignment > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 | ::run(derived(), other.derived(), internal::assign_op()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1239:27: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1239 | return Base::operator=(other.derived()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ 1063 | mat = trMat; | ~~~~^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ 1110 | internal::set_from_triplets >(begin, end, *this, internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ n2knn.cpp:80:22: required from here 80 | mat.setFromTriplets(tripletList.begin(),tripletList.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ (cd n2 && CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " MAKE="make -f \"/home/hornik/tmp/R/etc/Makeconf\" -f Makefile" make -f "/home/hornik/tmp/R/etc/Makeconf" -f Makefile lib) || exit 1; make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp4EANCe/R.INSTALL2dddc567032f32/N2R/src/n2' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c base.cc -o base.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c hnsw.cc -o hnsw.o hnsw.cc:386: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 386 | #pragma omp parallel num_threads(num_threads_) hnsw.cc:390: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 390 | #pragma omp for schedule(dynamic,128) hnsw.cc:401: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 401 | #pragma omp parallel num_threads(num_threads_) hnsw.cc:404: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 404 | #pragma omp for schedule(dynamic,128) hnsw.cc:621: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 621 | #pragma omp parallel for schedule(dynamic,128) num_threads(num_threads_) g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c hnsw_node.cc -o hnsw_node.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cc -o distance.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c heuristic.cc -o heuristic.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"./include" -fpic -g -O2 -Wall -pedantic -mtune=native -c mmap.cc -o mmap.o ar rvs ../libn2.a base.o hnsw.o hnsw_node.o distance.o heuristic.o mmap.o ar: creating ../libn2.a a - base.o a - hnsw.o a - hnsw_node.o a - distance.o a - heuristic.o a - mmap.o make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4EANCe/R.INSTALL2dddc567032f32/N2R/src/n2' g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o N2R.so RcppExports.o check_openmp.o n2knn.o -L. -lpthread -ln2 -lm -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4EANCe/R.INSTALL2dddc567032f32/N2R/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-N2R/00new/N2R/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (N2R) begin installing package ‘pagoda2’ * installing *source* package ‘RcppPlanc’ ... ** this is package ‘RcppPlanc’ version ‘2.0.13’ ** package ‘RcppPlanc’ successfully unpacked and MD5 sums checked ** using staged installation -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done This is libplanc 1.0.2 containing component nmflib 1.0.1 -- Found R: /home/hornik/tmp/R/bin/R (found version "R Under development (unstable) (2025-11-28 r89073) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see https://www.gnu.org/licenses/. ") -- Could NOT find MKL (missing: MKL_DIR) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find OpenBLAS (missing: OpenBLAS_DIR) -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Found R_HighFive: /home/hornik/tmp/CRAN_recheck/Library/HighFive -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: C -- Performing Test HDF5_LINKS -- Performing Test HDF5_LINKS - Success -- Found R_Rcpp: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp -- Found R_RcppArmadillo: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo -- Found R_RcppProgress: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress -- Performing Test UNSAFE_MATH -- Performing Test UNSAFE_MATH - Success -- Performing Test FINITE_MATH -- Performing Test FINITE_MATH - Success -- Performing Test TRAPPING_MATH -- Performing Test TRAPPING_MATH - Success -- Performing Test ERRNO_MATH -- Performing Test ERRNO_MATH - Success -- Performing Test UNSIGNED_ZERO -- Performing Test UNSIGNED_ZERO - Success -- Performing Test RECIPROCAL_MATH -- Performing Test RECIPROCAL_MATH - Success -- Performing Test ARCH_AVX -- Performing Test ARCH_AVX - Success -- Performing Test HAS_POPCNT -- Performing Test HAS_POPCNT - Success -- Looking for cblas.h -- Looking for cblas.h - found -- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC -- Checking for one of the modules 'hwloc' -- Looking for HWLOC - found using PkgConfig -- Found HWLOC: hwloc -- Performing Test HAVE_HWLOC_PARENT_MEMBER -- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success -- Performing Test HAVE_HWLOC_CACHE_ATTR -- Performing Test HAVE_HWLOC_CACHE_ATTR - Success -- Performing Test HAVE_HWLOC_OBJ_PU -- Performing Test HAVE_HWLOC_OBJ_PU - Success -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- NNLS_SOURCE_DIR = /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -- NMF_SOURCE_DIR = /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf -- NMFLIB_COMMON = /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (9.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: R_SHLIB_EXT -- Build files have been written to: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build ./configure: 50: cannot create _deps/highfive-src/include/highfive/bits/H5Friends.hpp: Directory nonexistent make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' /usr/bin/cmake -S/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc -B/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/CMakeFiles /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/depend make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/CMakeFiles/utils.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/build make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 11%] Building CXX object CMakeFiles/utils.dir/common/utils.cpp.o /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -I/usr/include/hdf5/serial -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -MD -MT CMakeFiles/utils.dir/common/utils.cpp.o -MF CMakeFiles/utils.dir/common/utils.cpp.o.d -o CMakeFiles/utils.dir/common/utils.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/utils.cpp In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/utils.cpp:4: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/utils.hpp: In instantiation of ‘void makeSparse(double, T*) [with T = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/utils.cpp:69:30: required from here 69 | makeSparse(sparsity, &W); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/utils.hpp:81:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 81 | for (int j = 0; j < X->n_cols; j++) { | ~~^~~~~~~~~~~ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 11%] Built target utils make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 22%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o /usr/bin/gcc-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/hw_detect.c make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 22%] Built target hw_detect make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/depend make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/CMakeFiles/detect_blas.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/build make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 33%] Building C object CMakeFiles/detect_blas.dir/common/detect_blas.c.o /usr/bin/gcc-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT CMakeFiles/detect_blas.dir/common/detect_blas.c.o -MF CMakeFiles/detect_blas.dir/common/detect_blas.c.o.d -o CMakeFiles/detect_blas.dir/common/detect_blas.c.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/detect_blas.c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/detect_blas.c: In function ‘get_openblas_parallel’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/detect_blas.c:16:46: warning: ISO C forbids initialization between function pointer and ‘void *’ [-Wpedantic] 16 | const openblas_init_t parallel_address = dlsym(libloc, "openblas_get_parallel"); | ^~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/detect_blas.c: In function ‘get_openblas_set’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/detect_blas.c:21:40: warning: ISO C forbids initialization between function pointer and ‘void *’ [-Wpedantic] 21 | const openblas_set_t set_address = dlsym(libloc, "openblas_set_num_threads"); | ^~~~~ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 33%] Built target detect_blas make -f nmf/CMakeFiles/nmflib.dir/build.make nmf/CMakeFiles/nmflib.dir/depend make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf/CMakeFiles/nmflib.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' make -f nmf/CMakeFiles/nmflib.dir/build.make nmf/CMakeFiles/nmflib.dir/build make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [ 44%] Building CXX object nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o -MF CMakeFiles/nmflib.dir/nmf_lib.cpp.o.d -o CMakeFiles/nmflib.dir/nmf_lib.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.cpp In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:5, from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:124:1: warning: multi-line comment [-Wcomment] 124 | // arma::mat* Hptr = this->Hi[i].get();\ | ^ In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:12: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In member function ‘void planc::INMF::load_whole_E(arma::uword) [with T = planc::H5Mat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:409:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 409 | if (numChunks * this->INMF_CHUNK_SIZE < n) numChunks++; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:413:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 413 | if (spanEnd > n - 1) spanEnd = n - 1; | ~~~~~~~~^~~~~~~ In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:4: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘class planc::symmEmbeddedNMFDriver >’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput planc::nmflib::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string]’ 44 | symmEmbeddedNMFDriver nmfRunner(options); | ^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here 8 | template planc::nmfOutput planc::nmflib::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat&Hinit); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: warning: ‘void planc::EmbeddedNMFDriver::parseParams(const planc::internalParams&) [with T = arma::Mat]’ was hidden [-Woverloaded-virtual=] 16 | virtual void parseParams(const internalParams&pc) { | ^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: note: by ‘void planc::symmEmbeddedNMFDriver::parseParams(const planc::internalSymmParams&) [with T = arma::Mat]’ 73 | void parseParams(const internalSymmParams&pc) { | ^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘class planc::symmEmbeddedNMFDriver >’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput planc::nmflib::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string]’ 44 | symmEmbeddedNMFDriver nmfRunner(options); | ^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here 8 | template planc::nmfOutput planc::nmflib::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat&Hinit); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: warning: ‘void planc::EmbeddedNMFDriver::parseParams(const planc::internalParams&) [with T = arma::SpMat]’ was hidden [-Woverloaded-virtual=] 16 | virtual void parseParams(const internalParams&pc) { | ^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: note: by ‘void planc::symmEmbeddedNMFDriver::parseParams(const planc::internalSymmParams&) [with T = arma::SpMat]’ 73 | void parseParams(const internalSymmParams&pc) { | ^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double) [with T = arma::Mat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int]’ 57 | BPPINMF solver(objectList, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 13 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 217 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = arma::Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 235 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:7: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double) [with T1 = arma::Mat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int]’ 146 | ONLINEINMF solver(matPtrVec, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 573 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T1 = arma::Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 190 | ONLINEINMF solver(matPtrVec, k, lambda, Hinit, Vinit, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 606 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::setB(const std::vector >&) [with T1 = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 192 | solver.setB(Binit); | ~~~~~~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setW(const arma::mat&, bool) [with T = arma::Mat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector > planc::nmflib::oinmf_project(std::vector >, const arma::mat&, std::vector >, const arma::uword&, const int&, const double&) [with T = arma::Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 230 | solver.setW(Winit, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 18 | template std::vector> planc::nmflib::oinmf_project(std::vector> matPtrVec, const arma::mat &Winit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) { | ~~~~~~~~~~~~~^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double) [with T = arma::SpMat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int]’ 57 | BPPINMF solver(objectList, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 13 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 217 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = arma::SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 235 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double) [with T1 = arma::SpMat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int]’ 146 | ONLINEINMF solver(matPtrVec, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 573 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T1 = arma::SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 190 | ONLINEINMF solver(matPtrVec, k, lambda, Hinit, Vinit, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 606 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::setB(const std::vector >&) [with T1 = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 192 | solver.setB(Binit); | ~~~~~~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setW(const arma::mat&, bool) [with T = arma::SpMat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector > planc::nmflib::oinmf_project(std::vector >, const arma::mat&, std::vector >, const arma::uword&, const int&, const double&) [with T = arma::SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 230 | solver.setW(Winit, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 18 | template std::vector> planc::nmflib::oinmf_project(std::vector> matPtrVec, const arma::mat &Winit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) { | ~~~~~~~~~~~~~^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double) [with T = planc::H5Mat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’ 57 | BPPINMF solver(objectList, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 13 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 217 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 235 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’ 146 | ONLINEINMF solver(matPtrVec, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 573 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T1 = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 190 | ONLINEINMF solver(matPtrVec, k, lambda, Hinit, Vinit, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 606 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::setB(const std::vector >&) [with T1 = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 192 | solver.setB(Binit); | ~~~~~~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setW(const arma::mat&, bool) [with T = planc::H5Mat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector > planc::nmflib::oinmf_project(std::vector >, const arma::mat&, std::vector >, const arma::uword&, const int&, const double&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 230 | solver.setW(Winit, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 18 | template std::vector> planc::nmflib::oinmf_project(std::vector> matPtrVec, const arma::mat &Winit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) { | ~~~~~~~~~~~~~^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’ 57 | BPPINMF solver(objectList, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 13 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 217 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 235 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’ 146 | ONLINEINMF solver(matPtrVec, k, lambda); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 573 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF::ONLINEINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 190 | ONLINEINMF solver(matPtrVec, k, lambda, Hinit, Vinit, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 606 | if (this->k > this->m) { | ~~~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::setB(const std::vector >&) [with T1 = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const std::vector >&, const std::vector >&, const arma::mat&, const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 192 | solver.setB(Binit); | ~~~~~~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 17 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const std::vector &Hinit, const std::vector &Vinit, const arma::mat &Winit, const std::vector &Ainit, const std::vector &Binit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setW(const arma::mat&, bool) [with T = planc::H5SpMat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector > planc::nmflib::oinmf_project(std::vector >, const arma::mat&, std::vector >, const arma::uword&, const int&, const double&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat; arma::uword = long long unsigned int]’ 230 | solver.setW(Winit, false); | ~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 18 | template std::vector> planc::nmflib::oinmf_project(std::vector> matPtrVec, const arma::mat &Winit, std::vector> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) { | ~~~~~~~~~~~~~^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::symmEmbeddedNMFDriver::parseParams(const planc::internalSymmParams&) [with T = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:86:19: required from ‘planc::symmEmbeddedNMFDriver::symmEmbeddedNMFDriver(planc::internalSymmParams) [with T = arma::Mat]’ 86 | this->parseParams(pc); | ~~~~~~^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput planc::nmflib::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string]’ 44 | symmEmbeddedNMFDriver nmfRunner(options); | ^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here 8 | template planc::nmfOutput planc::nmflib::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat&Hinit); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:80:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 80 | if (this->m_k >= this->A.n_rows) std::throw_with_nested( | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::symmEmbeddedNMFDriver::parseParams(const planc::internalSymmParams&) [with T = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:86:19: required from ‘planc::symmEmbeddedNMFDriver::symmEmbeddedNMFDriver(planc::internalSymmParams) [with T = arma::SpMat]’ 86 | this->parseParams(pc); | ~~~~~~^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput planc::nmflib::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string]’ 44 | symmEmbeddedNMFDriver nmfRunner(options); | ^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here 8 | template planc::nmfOutput planc::nmflib::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat&Hinit); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:80:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 80 | if (this->m_k >= this->A.n_rows) std::throw_with_nested( | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:6: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveU(int) [with T = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::Mat; arma::uword = long long unsigned int]’ 364 | this->solveU(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++; /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveW(int) [with T = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::Mat; arma::uword = long long unsigned int]’ 365 | this->solveW(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 289 | for (int j = 0; j < this->nDatasets; ++j) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveU(int) [with T = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::SpMat; arma::uword = long long unsigned int]’ 364 | this->solveU(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++; /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveW(int) [with T = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::SpMat; arma::uword = long long unsigned int]’ 365 | this->solveW(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 289 | for (int j = 0; j < this->nDatasets; ++j) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveU(int) [with T = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5Mat; arma::uword = long long unsigned int]’ 364 | this->solveU(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++; /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveW(int) [with T = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5Mat; arma::uword = long long unsigned int]’ 365 | this->solveW(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 289 | for (int j = 0; j < this->nDatasets; ++j) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveU(int) [with T = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’ 364 | this->solveU(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++; /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF::solveW(int) [with T = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’ 365 | this->solveW(ncores); | ~~~~~~^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput planc::nmflib::uinmf(const std::vector >&, const std::vector >&, std::vector >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col]’ 116 | solver.optimizeUANLS(niter, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 19 | template planc::uinmfOutput planc::nmflib::uinmf(const std::vector> &matPtrVec, const std::vector> &unsharedPtrVec, std::vector whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose); | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 289 | for (int j = 0; j < this->nDatasets; ++j) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setV(const std::vector >&, bool) [with T = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF::INMF(std::vector >, arma::uword, double, const std::vector >&, const arma::mat&, bool) [with T = arma::Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 158 | this->setV(VinitList); | ~~~~~~^~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = arma::Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 233 | std::vector VinitList, arma::mat Winit) : INMF(Ei, k, lambda, VinitList, Winit, false) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateW() [with T1 = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat; arma::uword = long long unsigned int]’ 479 | this->updateW(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 371 | for (arma::uword i = 0; i < this->m; i++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateV() [with T1 = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat; arma::uword = long long unsigned int]’ 480 | this->updateV(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 395 | for (arma::uword k = 0; k < this->m; k++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setV(const std::vector >&, bool) [with T = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF::INMF(std::vector >, arma::uword, double, const std::vector >&, const arma::mat&, bool) [with T = arma::SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 158 | this->setV(VinitList); | ~~~~~~^~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = arma::SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 233 | std::vector VinitList, arma::mat Winit) : INMF(Ei, k, lambda, VinitList, Winit, false) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateW() [with T1 = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat; arma::uword = long long unsigned int]’ 479 | this->updateW(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 371 | for (arma::uword i = 0; i < this->m; i++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateV() [with T1 = arma::SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat; arma::uword = long long unsigned int]’ 480 | this->updateV(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 395 | for (arma::uword k = 0; k < this->m; k++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setV(const std::vector >&, bool) [with T = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF::INMF(std::vector >, arma::uword, double, const std::vector >&, const arma::mat&, bool) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 158 | this->setV(VinitList); | ~~~~~~^~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 233 | std::vector VinitList, arma::mat Winit) : INMF(Ei, k, lambda, VinitList, Winit, false) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateW() [with T1 = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’ 479 | this->updateW(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 371 | for (arma::uword i = 0; i < this->m; i++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateV() [with T1 = planc::H5Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’ 480 | this->updateV(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 395 | for (arma::uword k = 0; k < this->m; k++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF::setV(const std::vector >&, bool) [with T = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF::INMF(std::vector >, arma::uword, double, const std::vector >&, const arma::mat&, bool) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 158 | this->setV(VinitList); | ~~~~~~^~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF::BPPINMF(std::vector >&, arma::uword, double, std::vector >, std::vector >, arma::mat) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 233 | std::vector VinitList, arma::mat Winit) : INMF(Ei, k, lambda, VinitList, Winit, false) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput planc::nmflib::bppinmf(std::vector >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector >&, const std::vector >&, const arma::mat&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat]’ 81 | BPPINMF solver(objectList, k, lambda, HinitList, VinitList, Winit); | ^~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 14 | template planc::inmfOutput planc::nmflib::bppinmf(std::vector> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector &HinitList, const std::vector &VinitList, const arma::mat &Winit, const int &nCores); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) { /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateW() [with T1 = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’ 479 | this->updateW(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 371 | for (arma::uword i = 0; i < this->m; i++) { | ~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF::updateV() [with T1 = planc::H5SpMat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’ 480 | this->updateV(); | ~~~~~~^~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’ 751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores); | ~~~~~~^~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput planc::nmflib::oinmf(std::vector >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’ 147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here 16 | template planc::oinmfOutput planc::nmflib::oinmf(std::vector> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 395 | for (arma::uword k = 0; k < this->m; k++) { | ~~^~~~~~~~~ In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/NMFDriver.hpp:11, from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:7: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::Mat; arma::mat = arma::Mat; arma::fvec = arma::Col]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF::commonSolve() [with T = arma::Mat]’ 129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:287:19: required from ‘void planc::BPPNMF::computeNMF() [with T = arma::Mat]’ 287 | this->commonSolve(); | ~~~~~~^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/NMFDriver.hpp:384:32: required from ‘void planc::NMFDriver::CallNMF() [with NMFTYPE = planc::BPPNMF >; T = arma::Mat]’ 384 | nmfAlgorithm.computeNMF(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/NMFDriver.hpp:317:39: required from ‘void planc::NMFDriver::callNMF() [with T = arma::Mat]’ 317 | CallNMF>(); | ~~~~~~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:245:22: required from ‘static int planc::nmflib::runNMF(const planc::params&) [with T = arma::Mat; eT = double]’ 245 | myNMF.callNMF(); | ~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here 6 | template int planc::nmflib::runNMF(const planc::params& opts); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 64 | if (spanEnd > input.n_cols - 1) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for (int i = 0; i < subproblems.size(); i++) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 105 | for (int i = 0; i < subproblems.size(); i++) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::SpMat; arma::mat = arma::Mat; arma::fvec = arma::Col]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF::commonSolve() [with T = arma::SpMat]’ 129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:287:19: required from ‘void planc::BPPNMF::computeNMF() [with T = arma::SpMat]’ 287 | this->commonSolve(); | ~~~~~~^~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/NMFDriver.hpp:445:32: required from ‘void planc::NMFDriver::CallNMF() [with NMFTYPE = planc::BPPNMF >; T = arma::SpMat]’ 445 | nmfAlgorithm.computeNMF(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/NMFDriver.hpp:317:39: required from ‘void planc::NMFDriver::callNMF() [with T = arma::SpMat]’ 317 | CallNMF>(); | ~~~~~~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_lib.inl:245:22: required from ‘static int planc::nmflib::runNMF(const planc::params&) [with T = arma::SpMat; eT = double]’ 245 | myNMF.callNMF(); | ~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here 6 | template int planc::nmflib::runNMF(const planc::params& opts); \ | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 64 | if (spanEnd > input.n_cols - 1) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for (int i = 0; i < subproblems.size(); i++) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 105 | for (int i = 0; i < subproblems.size(); i++) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::EmbeddedNMFDriver::loadWHInit(arma::mat&, arma::mat&) [with T = arma::SpMat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:24:14: required from here 24 | void loadWHInit(arma::mat&W, arma::mat&H) override { | ^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:27:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 27 | if (W.n_rows != this->m_m || W.n_cols != this->m_k) { | ~~~~~~~~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:38:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 38 | if (H.n_rows != this->m_n || H.n_cols != this->m_k) { | ~~~~~~~~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::EmbeddedNMFDriver::loadWHInit(arma::mat&, arma::mat&) [with T = arma::Mat; arma::mat = arma::Mat]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:24:14: required from here 24 | void loadWHInit(arma::mat&W, arma::mat&H) override { | ^~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:27:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 27 | if (W.n_rows != this->m_m || W.n_cols != this->m_k) { | ~~~~~~~~~^~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:38:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare] 38 | if (H.n_rows != this->m_n || H.n_cols != this->m_k) { | ~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o -MF CMakeFiles/nmflib.dir/bppnmf.cpp.o.d -o CMakeFiles/nmflib.dir/bppnmf.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.cpp In file included from /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.cpp:4: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::SpMat; arma::mat = arma::Mat; arma::fvec = arma::Col]’: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF::commonSolve() [with T = arma::SpMat]’ 129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.cpp:29:22: required from here 29 | this->commonSolve(); | ~~~~~~~~~~~~~~~~~^~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 64 | if (spanEnd > input.n_cols - 1) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 91 | for (int i = 0; i < subproblems.size(); i++) { | ^ /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, arma::Col > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 105 | for (int i = 0; i < subproblems.size(); i++) { | ^ [ 66%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -MF CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o.d -o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls/nnls_lib.cpp [ 77%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -MF CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/parseutils.cpp [ 88%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/g++-15 -DUSING_R -I/home/hornik/tmp/R/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include -I/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/nnls -I/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf -I/home/hornik/tmp/CRAN_recheck/Library/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o -MF CMakeFiles/nmflib.dir/__/common/data.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/data.cpp.o -c /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/planc/common/data.cpp [100%] Linking CXX static library libnmflib.a cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/cmake -P CMakeFiles/nmflib.dir/cmake_clean_target.cmake cd /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/nmf && /usr/bin/cmake -E cmake_link_script CMakeFiles/nmflib.dir/link.txt --verbose=1 /usr/bin/ar qc libnmflib.a CMakeFiles/nmflib.dir/nmf_lib.cpp.o CMakeFiles/nmflib.dir/bppnmf.cpp.o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o CMakeFiles/nmflib.dir/__/common/data.cpp.o ../CMakeFiles/utils.dir/common/utils.cpp.o ../CMakeFiles/hw_detect.dir/common/hw_detect.c.o ../CMakeFiles/detect_blas.dir/common/detect_blas.c.o /usr/bin/ranlib libnmflib.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' [100%] Built target nmflib make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' /usr/bin/cmake -E cmake_progress_start /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build/CMakeFiles 0 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/build' -- Install configuration: "RelWithDebInfo" -- Installing: /home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src/libnmflib.a ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/tmp/CRAN_recheck/Library/HighFive/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/tmp/CRAN_recheck/Library/HighFive/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppplanc_nmf.cpp -o rcppplanc_nmf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/tmp/CRAN_recheck/Library/HighFive/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppplanc_nnls.cpp -o rcppplanc_nnls.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RcppPlanc.so RcppExports.o rcppplanc_nmf.o rcppplanc_nnls.o -L./ -lnmflib -fopenmp /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libhwloc.so -L/usr/lib/x86_64-linux-gnu -lhwloc /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a /usr/lib/x86_64-linux-gnu/libm.so -L/home/hornik/tmp/R/lib -lR -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB3Odn3/R.INSTALL2dcdfd1b44893a/RcppPlanc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppPlanc/00new/RcppPlanc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppPlanc) * installing *source* package ‘DropletUtils’ ... ** this is package ‘DropletUtils’ version ‘1.30.0’ ** package ‘DropletUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ9T85N/R.INSTALL2de32d2e7e3e5c/DropletUtils/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dqrng/include' -I'/home/hornik/tmp/CRAN_recheck/Library/scuttle/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dqrng/include' -I'/home/hornik/tmp/CRAN_recheck/Library/scuttle/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c downsample_run.cpp -o downsample_run.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/beachmat/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dqrng/include' -I'/home/hornik/tmp/CRAN_recheck/Library/scuttle/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c encode_sequences.cpp -o encode_sequences.o encode_sequences.cpp: In function ‘Rcpp::IntegerVector encode_sequences(Rcpp::StringVector)’: encode_sequences.cpp:8:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 8 | for (size_t i=0; i