R Under development (unstable) (2023-11-29 r85646 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(ggPMX)
> library(data.table)
> setDTthreads(1)
> test_check("ggPMX")
use dv_obsVsPred.txt as obsvspred file.
use dv_residuals.txt as residuals file.
use dv_residuals.txt as residuals file.
style: equal
  one of 8 possible partitions of this variable into 2 classes
 [0,6) [6,12] 
     6      3 


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
character(0)


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
$is.title
[1] TRUE

$axis.title
$axis.title$size
[1] 12


$axis.text
$axis.text$size
[1] 10


$ranges
NULL

$is.smooth
[1] TRUE

$smooth
$smooth$se
[1] FALSE

$smooth$linetype
[1] 1

$smooth$linewidth
[1] 1.5

$smooth$method
[1] "loess"

$smooth$colour
[1] "red"


$is.band
[1] FALSE

$band
$band$yintercept
[1] -1.96  1.96

$band$linetype
[1] 2

$band$linewidth
[1] 0.5


$is.draft
[1] TRUE

$draft
$draft$size
[1] 5

$draft$label
[1] "DRAFT"

$draft$colour
[1] "grey50"

$draft$x
[1] Inf

$draft$y
[1] -Inf


$discrete
[1] FALSE

$is.identity_line
[1] FALSE

$identity_line
$identity_line$colour
[1] "blue"

$identity_line$intercept
[1] 0


$scale_x_log10
[1] FALSE

$scale_y_log10
[1] FALSE

$color.scales
NULL

$is.legend
[1] FALSE

$legend.position
[1] "right"

$labels
$labels$title
[1] "hello"


$is.title
[1] TRUE

$axis.title
$axis.title$size
[1] 12


$axis.text
$axis.text$size
[1] 10


$ranges
NULL

$is.smooth
[1] TRUE

$smooth
$smooth$se
[1] FALSE

$smooth$linetype
[1] 1

$smooth$linewidth
[1] 1.5

$smooth$method
[1] "loess"

$smooth$colour
[1] "red"


$is.band
[1] FALSE

$band
$band$yintercept
[1] -1.96  1.96

$band$linetype
[1] 2

$band$linewidth
[1] 0.5


$is.draft
[1] TRUE

$draft
$draft$size
[1] 5

$draft$label
[1] "DRAFT"

$draft$colour
[1] "grey50"

$draft$x
[1] Inf

$draft$y
[1] -Inf


$discrete
[1] FALSE

$is.identity_line
[1] FALSE

$identity_line
$identity_line$colour
[1] "blue"

$identity_line$intercept
[1] 0


$scale_x_log10
[1] FALSE

$scale_y_log10
[1] FALSE

$color.scales
NULL

$is.legend
[1] FALSE

$legend.position
[1] "right"

$labels
$labels$title
[1] "hello"


No data eta provided for plot eta_hist 
No data eta provided for plot eta_box 
No data eta provided for plot eta_matrix 
No data eta provided for plot eta_cats 
No data eta provided for plot eta_conts 
No data eta provided for plot eta_qq 
No data eta provided for plot eta_hist 
No data eta provided for plot eta_box 
No data eta provided for plot eta_matrix 
No data eta provided for plot eta_cats 
No data eta provided for plot eta_conts 
No data eta provided for plot eta_qq 
No data IND1 provided for plot individual 
      ID    TIME     PRED    IPRED  AMT   Y EVID WT0 AGE0 SEX STUD DV isobserv
   1:  1  0.2182  51.3092  53.6590 2000   0    1  87   73   1    1 NA accepted
   2:  1  0.5091 112.9294 118.0946    0 130    0  87   73   1    1 NA accepted
   3:  1  0.8000 167.4284 175.0867    0 130    0  87   73   1    1 NA accepted
   4:  1  1.0909 215.4506 225.3192    0 228    0  87   73   1    1 NA accepted
   5:  1  1.3818 257.5859 269.4167    0 228    0  87   73   1    1 NA accepted
  ---                                                                         
4546: 50 25.2364  49.0518  84.7612    0 121    0  92   19   1    2 NA accepted
4547: 50 25.5273  47.1749  82.1470    0 121    0  92   19   1    2 NA accepted
4548: 50 25.8182  45.3679  79.6108    0 121    0  92   19   1    2 NA accepted
4549: 50 26.1091  43.6283  77.1504    0 121    0  92   19   1    2 NA accepted
4550: 50 26.4000  41.9537  74.7639    0 121    0  92   19   1    2 NA accepted

pmx object:

pmx object:


|PARAM                |VALUE |
|:--------------------|:-----|
|working directory    |      |
|Modelling input file |      |
|dv                   |Y     |
|dvid                 |DVID  |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |

pmx object:


|PARAM                |VALUE |
|:--------------------|:-----|
|working directory    |      |
|Modelling input file |      |
|dv                   |Y     |
|dvid                 |DVID  |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |

pmx object:


|PARAM                |VALUE        |
|:--------------------|:------------|
|working directory    |theophylline |
|Modelling input file |data_pk.csv  |
|dv                   |Y            |
|dvid                 |dvid         |
|cats                 |SEX          |
|conts                |WT0,AGE0     |
|strats               |STUD         |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
use  predictions1.txt  as  model predictions file .
use  finegrid1.txt  as  finegrid file .
use  predictions2.txt  as  model predictions file .
use  finegrid2.txt  as  finegrid file .
`geom_smooth()` using formula = 'y ~ x'
[ FAIL 0 | WARN 23 | SKIP 26 | PASS 1010 ]

══ Skipped tests (26) ══════════════════════════════════════════════════════════
• On CRAN (16): 'test-nlmixr.R:3:5', 'test-nlmixr.R:42:5',
  'test-nlmixr.R:115:5', 'test-pmx-report.R:142:5', 'test-pmx-report.R:151:5',
  'test-pmx-report.R:161:5', 'test-pmx-report.R:178:5',
  'test-pmx-report.R:224:12', 'test-pmx-report.R:258:5',
  'test-pmx-report.R:292:12', 'test-pmx-report.R:347:12',
  'test-pmx-report.R:381:12', 'test-pmx-report.R:397:12',
  'test-pmx-report.R:450:12', 'test-utils.R:101:5', 'test-vdiff.R:96:9'
• On Windows (9): 'test-reader.R:8:5', 'test-reader.R:17:13',
  'test-reader.R:27:13', 'test-reader.R:39:13', 'test-reader.R:57:13',
  'test-reader.R:77:13', 'test-reader.R:94:5', 'test-reader.R:116:13',
  'test-reader.R:125:13'
• empty test (1): 'test-nonmem_reader.R:97:3'

[ FAIL 0 | WARN 23 | SKIP 26 | PASS 1010 ]
> 
> proc.time()
   user  system elapsed 
 264.93   12.64  304.50