R Under development (unstable) (2023-11-28 r85645 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ggPMX)
> 
> test_check("ggPMX")
style: equal
  one of 8 possible partitions of this variable into 2 classes
 [0,6) [6,12] 
     6      3 


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
character(0)


|data_name |data_file |data_label |
|:---------|:---------|:----------|


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
No data eta provided for plot eta_hist 
No data eta provided for plot eta_box 
No data eta provided for plot eta_matrix 
No data eta provided for plot eta_cats 
No data eta provided for plot eta_conts 
No data eta provided for plot eta_qq 
No data eta provided for plot eta_hist 
No data eta provided for plot eta_box 
No data eta provided for plot eta_matrix 
No data eta provided for plot eta_cats 
No data eta provided for plot eta_conts 
No data eta provided for plot eta_qq 

pmx object:

pmx object:


|PARAM                |VALUE |
|:--------------------|:-----|
|working directory    |      |
|Modelling input file |      |
|dv                   |Y     |
|dvid                 |DVID  |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |

pmx object:


|PARAM                |VALUE |
|:--------------------|:-----|
|working directory    |      |
|Modelling input file |      |
|dv                   |Y     |
|dvid                 |DVID  |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |

pmx object:


|PARAM                |VALUE        |
|:--------------------|:------------|
|working directory    |theophylline |
|Modelling input file |data_pk.csv  |
|dv                   |Y            |
|dvid                 |dvid         |
|cats                 |SEX          |
|conts                |WT0,AGE0     |
|strats               |STUD         |


|data_name   |data_file       |data_label                                |
|:-----------|:---------------|:-----------------------------------------|
|predictions |predictions.txt |model predictions file                    |
|estimates   |estimates.txt   |parameter estimates file                  |
|eta         |indiv_eta.txt   |invidual estimates of random effects file |
|finegrid    |finegrid.txt    |finegrid file                             |
|input       |data_pk.csv     |modelling input                           |


|plot_name       |plot_type |
|:---------------|:---------|
|abs_iwres_ipred |SCATTER   |
|abs_iwres_time  |SCATTER   |
|iwres_ipred     |SCATTER   |
|iwres_time      |SCATTER   |
|iwres_dens      |PMX_DENS  |
|iwres_qq        |PMX_QQ    |
|npde_time       |SCATTER   |
|npde_pred       |SCATTER   |
|npde_qq         |PMX_QQ    |
|dv_pred         |SCATTER   |
|dv_ipred        |SCATTER   |
|individual      |IND       |
|eta_hist        |DIS       |
|eta_box         |DIS       |
|eta_matrix      |ETA_PAIRS |
|eta_cats        |ETA_COV   |
|eta_conts       |ETA_COV   |
|eta_qq          |PMX_QQ    |
|pmx_vpc         |VPC       |
use  predictions1.txt  as  model predictions file .
use  finegrid1.txt  as  finegrid file .
use  predictions2.txt  as  model predictions file .
use  finegrid2.txt  as  finegrid file .
[ FAIL 0 | WARN 6 | SKIP 2 | PASS 300 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-utils.R:100:3'
• empty test (1): 'test-nonmem_reader.R:95:1'

[ FAIL 0 | WARN 6 | SKIP 2 | PASS 300 ]
> 
> proc.time()
   user  system elapsed 
  46.68    4.03   48.71