context("Test Scatter residual plots") ctr <- theophylline() #------------------- pmx_plot_dv_pred start ----------------------------------- test_that("pmx_plot_dv_pred: params: controller result: gg, ggplot", { expect_true(inherits(pmx_plot_dv_pred(ctr = ctr), c("gg", "ggplot"))) }) test_that("pmx_plot_dv_pred: params: no result: error", { expect_error(pmx_plot_dv_pred()) }) test_that("pmx_plot_dv_pred: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_dv_pred(ctr = ctr)) }) test_that("pmx_plot_dv_pred: params: ctr; result: list", { p <- pmx_plot_dv_pred(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_dv_pred: params: ctr; result: identical inherist of has_scale", { p <- pmx_plot_dv_pred(ctr) expect_true(inherits(p$scales$has_scale, "ggproto_method")) }) test_that("pmx_plot_dv_pred: params: ctr_mlx; result: identical scales inherits", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_dv_pred(ctr_mlx) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_dv_pred: params: ctr, ylim; result: identical structure", { p <- pmx_plot_dv_pred(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) test_that("pmx_plot_dv_pred: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_dv_pred(ctr = ctr)) }) test_that("pmx_plot_dv_pred: params: ctrl result: x and y axes equal by default", { ctr <- theophylline() p <- pmx_plot_dv_pred(ctr) expect_equal( p[["coordinates"]][["limits"]][["x"]], p[["coordinates"]][["limits"]][["y"]] ) } ) #------------------- pmx_plot_dv_pred end ------------------------------------- #------------------- pmx_plot_iwres_time start -------------------------------- test_that("pmx_plot_iwres_time: params: controller result: gg, ggplot", { expect_true(inherits(pmx_plot_iwres_time(ctr = ctr), c("gg", "ggplot"))) }) test_that("pmx_plot_iwres_time: params: no result: error", { expect_error(pmx_plot_iwres_time()) }) test_that("pmx_plot_iwres_time: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_iwres_time(ctr = ctr)) }) test_that("pmx_plot_iwres_time: params: ctr; result: list", { p <- pmx_plot_iwres_time(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_iwres_time: params: ctr; result: identical structure", { p <- pmx_plot_iwres_time(ctr) expect_identical(p$scales$scales[[1]]$limits, c(-3.3237, 3.3237)) }) test_that("pmx_plot_iwres_time: params: ctr_mlx; result: identical structure", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_iwres_time(ctr_mlx) expect_identical(p$scales$scales[[1]]$limits, c(-3.7749, 3.7749)) }) test_that("pmx_plot_iwres_time: params: ctr, ylim; result: identical structure", { p <- pmx_plot_iwres_time(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) #------------------- pmx_plot_iwres_time end ---------------------------------- #------------------- pmx_plot_npde_time start --------------------------------- test_that("pmx_plot_npde_time: params: controller result: gg", { expect_true(inherits(pmx_plot_npde_time(ctr = ctr), "gg")) }) test_that("pmx_plot_npde_time: params: no result: error", { expect_error(pmx_plot_npde_time()) }) test_that("pmx_plot_npde_time: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_npde_time(ctr = ctr)) }) test_that("pmx_plot_npde_time: params: ctr, explicit filter; result: identical type", { p <- ctr %>% pmx_plot_npde_time(filter = "STUD == 1") expect_true(inherits(p, "ggplot")) }) test_that("pmx_plot_npde_time: params: ctr, implicit filter; result: identical type", { filter_string <- "STUD == 1" p <- ctr %>% pmx_plot_npde_time(filter = filter_string) expect_true(inherits(p, "ggplot")) }) #------------------- pmx_plot_npde_time end ----------------------------------- #------------------- pmx_plot_npde_pred start --------------------------------- test_that("pmx_plot_npde_pred: params: controller result: gg, ggplot", { expect_true(inherits(pmx_plot_npde_pred(ctr = ctr), c("gg", "ggplot"))) }) test_that("pmx_plot_npde_pred: params: no result: error", { expect_error(pmx_plot_npde_pred()) }) test_that("pmx_plot_npde_pred: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_npde_pred(ctr = ctr)) }) test_that("pmx_plot_npde_pred: params: ctr; result: list", { p <- pmx_plot_npde_pred(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_npde_pred: params: ctr; result: identical structure", { p <- pmx_plot_npde_pred(ctr) expect_identical(p$scales$scales[[1]]$limits, c(-3.934, 3.934)) }) test_that("pmx_plot_npde_pred: params: ctr_mlx; result: identical scales inherits", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_npde_pred(ctr_mlx) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_npde_pred: params: ctr, ylim; result: identical structure", { p <- pmx_plot_npde_pred(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) #------------------- pmx_plot_npde_pred end ----------------------------------- #------------------- pmx_plot_abs_iwres_ipred start --------------------------- test_that("pmx_plot_abs_iwres_ipred: params: controller result: gg, ggplot", { expect_true(inherits(pmx_plot_abs_iwres_ipred(ctr = ctr), c("gg", "ggplot"))) }) test_that("pmx_plot_abs_iwres_time: params: controller result: gg", { ctr <- theophylline() expect_true(inherits(pmx_plot_abs_iwres_time(ctr = ctr), "gg")) }) test_that("pmx_plot_abs_iwres_ipred: params: no result: error", { expect_error(pmx_plot_abs_iwres_ipred()) }) test_that( "pmx_plot_abs_iwres_ipred: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_abs_iwres_ipred(ctr = ctr)) } ) test_that("pmx_plot_abs_iwres_ipred: params: ctr; result: list", { p <- pmx_plot_abs_iwres_ipred(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_abs_iwres_ipred: params: ctr; result: identical structure", { p <- pmx_plot_abs_iwres_ipred(ctr) expect_identical(p$scales$scales, list()) }) test_that("pmx_plot_abs_iwres_ipred: params: ctr_mlx; result: identical structure", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_abs_iwres_ipred(ctr_mlx) expect_identical(p$scales$scales, list()) }) test_that("pmx_plot_abs_iwres_ipred: params: ctr, ylim; result: identical structure", { p <- pmx_plot_abs_iwres_ipred(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) #------------------- pmx_plot_abs_iwres_ipred end ---------------------------- #------------------- pmx_plot_iwres_ipred start ------------------------------- test_that("pmx_plot_iwres_ipred: params: controller result: gg, ggplot", { expect_true(inherits(pmx_plot_iwres_ipred(ctr = ctr), c("gg", "ggplot"))) }) test_that("pmx_plot_iwres_ipred: params: no result: error", { expect_error(pmx_plot_iwres_ipred()) }) test_that( "pmx_plot_iwres_ipred: params: not controller result: error", { ctr <- theophylline() %>% get_data("eta") expect_error(pmx_plot_iwres_ipred(ctr = ctr)) } ) test_that("pmx_plot_iwres_ipred: params: ctr; result: list", { p <- pmx_plot_iwres_ipred(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_iwres_ipred: params: ctr; result: identical structure", { p <- pmx_plot_iwres_ipred(ctr) expect_identical( p$scales$scales[[1]]$limits, c(-3.3237, 3.3237) ) }) test_that("pmx_plot_iwres_ipred: params: ctr_mlx; result: identical structure", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_iwres_ipred(ctr_mlx) expect_identical( p$scales$scales[[1]]$limits, c(-3.7749, 3.7749) ) }) test_that("pmx_plot_iwres_ipred: params: ctr, ylim; result: identical structure", { p <- pmx_plot_iwres_ipred(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) #------------------- pmx_plot_iwres_ipred end -------------------------------- #------------------- pmx_plot_dv_ipred start --------------------------------- test_that("pmx_plot_dv_ipred: params: ctr; result: ggplot", { expect_true(inherits(pmx_plot_dv_ipred(ctr), "ggplot")) }) test_that("pmx_plot_dv_ipred: params: ctr; result: list", { p <- pmx_plot_dv_ipred(ctr) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_dv_ipred: params: ctr; result: identical inherist of has_scale", { p <- pmx_plot_dv_ipred(ctr) expect_true(inherits(p$scales$has_scale, "ggproto_method")) }) test_that("pmx_plot_dv_ipred: params: ctr_mlx; result: identical scales inherits", { mlxpath <- file.path( system.file(package = "ggPMX"), "testdata", "1_popPK_model", "project.mlxtran" ) ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing") p <- pmx_plot_dv_ipred(ctr_mlx) expect_true(inherits(p$scales$scales, "list")) }) test_that("pmx_plot_dv_ipred: params: ctr, ylim; result: identical structure", { p <- pmx_plot_dv_ipred(ctr) + ylim(-5, 5) expect_identical( p$scales$scales[[1]]$limits, c(-5, 5) ) }) #------------------- pmx_plot_dv_ipred end ------------------------------------