context("Test computing Shrinkage") ctr <- theophylline() ctr2 <- data.table(x = c(2, 3)) #------------------- pmx_comp_shrink start ------------------------------------ test_that("pmx_comp_shrink: params: ctr result: sd and var are calculated correctly", { expect_identical( c(0.1125175, 0.9469996, 0.7423478, 0.0579371, 0.7697818, 0.4924055), round(digits=7, as.vector( sapply(c("var", "sd"), function(n) pmx_comp_shrink(ctr, fun=n)[["SHRINK"]])) ) ) }) test_that("pmx_comp_shrink: params: ctr is controller result:data.table", { expect_true(inherits(pmx_comp_shrink(ctr = ctr), "data.table")) }) test_that("pmx_comp_shrink: params: ctr is controller result: identical structure", { expect_identical( colnames(pmx_comp_shrink(ctr = ctr)), c("EFFECT", "OMEGA", "SHRINK", "POS", "FUN") ) expect_identical( pmx_comp_shrink(ctr = ctr)[[1]], c("Cl", "V", "ka") ) comp_shr <- pmx_comp_shrink(ctr = ctr) c("Cl", "V", "ka") expect_true(is.null(comp_shr$strat.facet)) expect_true(is.null(comp_shr$strat.color)) expect_true(is.null(comp_shr$filter)) }) test_that("pmx_comp_shrink: params: ctr is controller, filter result: identical structure", { comp_shr <- pmx_comp_shrink(ctr = ctr, filter = FUN == sd) expect_true(is.null(comp_shr$filter)) }) test_that("pmx_comp_shrink: params: ctr is controller result:data.table", { expect_true(inherits(pmx_comp_shrink(ctr = ctr), "data.table")) }) test_that( "pmx_comp_shrink: params: ctr is controller and function in (var,sd) result: right structure of result data.table", { expect_true(all(sapply(pmx_comp_shrink(ctr = ctr, fun = "sd")[[5]], function(x) { x == "sd" }))) } ) test_that("pmx_comp_shrink: params: ctr is not controller result: error", { expect_error(pmx_comp_shrink(ctr = ctr2)) }) #------------------- pmx_comp_shrink end --------------------------------------