* using log directory 'd:/RCompile/CRANincoming/R-devel/ggDNAvis.Rcheck'
* using R Under development (unstable) (2025-08-27 r88724 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ggDNAvis/DESCRIPTION' ... OK
* this is package 'ggDNAvis' version '0.2.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Evelyn Jade <evelynjade42@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Dorado (12:254)
  methylation (12:207)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ggDNAvis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] NOTE
visualise_many_sequences: no visible binding for global variable
  'sequence_colour_palettes'
visualise_many_sequences: no visible binding for global variable 'x'
visualise_many_sequences: no visible binding for global variable 'y'
visualise_many_sequences: no visible binding for global variable
  'x_position'
visualise_many_sequences: no visible binding for global variable
  'y_position'
visualise_many_sequences: no visible binding for global variable
  'annotation'
visualise_methylation: no visible binding for global variable 'x'
visualise_methylation: no visible binding for global variable 'y'
visualise_methylation: no visible binding for global variable
  'clamped_layer'
visualise_methylation_colour_scale: no visible binding for global
  variable 'xmin'
visualise_methylation_colour_scale: no visible binding for global
  variable 'xmax'
visualise_single_sequence: no visible binding for global variable
  'sequence_colour_palettes'
visualise_single_sequence: no visible binding for global variable 'x'
visualise_single_sequence: no visible binding for global variable 'y'
visualise_single_sequence: no visible binding for global variable
  'x_position'
visualise_single_sequence: no visible binding for global variable
  'y_position'
visualise_single_sequence: no visible binding for global variable
  'annotation'
visualise_single_sequence: no visible binding for global variable
  'type'
Undefined global functions or variables:
  annotation clamped_layer sequence_colour_palettes type x x_position
  xmax xmin y y_position
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [30s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [53s] OK
  Running 'testthat.R' [53s]
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs