* using log directory 'd:/RCompile/CRANincoming/R-devel/gfoRmulaICE.Rcheck'
* using R Under development (unstable) (2024-11-30 r87409 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'gfoRmulaICE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gfoRmulaICE' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Zhaoxi Cheng <zcheng@hsph.harvard.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  al (21:109)
  confounders (23:177)
  et (21:106)
  prespecified (24:123)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'gfoRmulaICE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'ice.Rd':
ice
  Code: function(data, time_points, id, time_name, outcome_name,
                 censor_name = NULL, compevent_name = NULL, comp_effect
                 = 0, outcome_model, censor_model = NULL,
                 competing_model = NULL, hazard_model = NULL,
                 global_hazard = FALSE, ref_idx = 0, estimator,
                 int_descript, ci_method = "percentile", nsamples = 0,
                 seed = 1, coverage = 95, parallel = FALSE, ncores = 2,
                 verbose = TRUE, ...)
  Docs: function(data, time_points, id, time_name, outcome_name,
                 censor_name = NULL, compevent_name = NULL, comp_effect
                 = 0, outcome_model, censor_model = NULL,
                 competing_model = NULL, hazard_model = NULL,
                 global_hazard = F, ref_idx = 0, estimator,
                 int_descript, ci_method = "percentile", nsamples = 0,
                 seed = 1, coverage = 95, parallel = F, ncores = 2,
                 verbose = TRUE, ...)
  Mismatches in argument default values:
    Name: 'global_hazard' Code: FALSE Docs: F
    Name: 'parallel' Code: FALSE Docs: F

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [22s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [13m] OK
  Running 'testthat.R' [13m]
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE