* using log directory ‘/srv/hornik/tmp/CRAN_pretest/gfoRmulaICE.Rcheck’
* using R Under development (unstable) (2024-12-01 r87410)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘gfoRmulaICE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gfoRmulaICE’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Zhaoxi Cheng <zcheng@hsph.harvard.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  al (21:109)
  et (21:106)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘gfoRmulaICE’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/13s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'ice.Rd':
ice
  Code: function(data, time_points, id, time_name, outcome_name,
                 censor_name = NULL, compevent_name = NULL, comp_effect
                 = 0, outcome_model, censor_model = NULL,
                 competing_model = NULL, hazard_model = NULL,
                 global_hazard = FALSE, ref_idx = 0, estimator,
                 int_descript, ci_method = "percentile", nsamples = 0,
                 seed = 1, coverage = 95, parallel = FALSE, ncores = 2,
                 verbose = TRUE, ...)
  Docs: function(data, time_points, id, time_name, outcome_name,
                 censor_name = NULL, compevent_name = NULL, comp_effect
                 = 0, outcome_model, censor_model = NULL,
                 competing_model = NULL, hazard_model = NULL,
                 global_hazard = F, ref_idx = 0, estimator,
                 int_descript, ci_method = "percentile", nsamples = 0,
                 seed = 1, coverage = 95, parallel = F, ncores = 2,
                 verbose = TRUE, ...)
  Mismatches in argument default values:
    Name: 'global_hazard' Code: FALSE Docs: F
    Name: 'parallel' Code: FALSE Docs: F

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [240s/241s] OK
  Running ‘testthat.R’ [240s/240s]
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 1 NOTE